Serratia grimesii: SGBXF1_03744
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Entry
SGBXF1_03744 CDS
T09948
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sgri
Serratia grimesii
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sgri03009
]
SGBXF1_03744 (srmB)
Enzymes [BR:
sgri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SGBXF1_03744 (srmB)
Ribosome biogenesis [BR:
sgri03009
]
Prokaryotic type
rRNA helicases
SGBXF1_03744 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_11
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
SMZ58092
LinkDB
All DBs
Position
1:3961547..3962872
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AA seq
441 aa
AA seq
DB search
MTVTNFSELELDERLINALRDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLL
PVLQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RNQTLLFSATLEGDAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVQHKTALLV
HLLQQPDVQKSVIFVRKRERVHELAAWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVN
VLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKVGRYLNEPLKARVIEELRPSTKVPSEKSNGKPSKKVIAKRAADKEKNKEKAKVKVRHR
DAKNVGKRRQPKAKPEDNGAK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaaccaatttttccgagctcgaactcgatgaacgcctgataaacgccctgcgt
gataaaggctacgaacgcccaaccgccattcaagccgaggcgatcccgcctgcgatggat
gggcgcgacgtattgggttcggcgccgaccggcaccggcaagaccgctgcatttttgctg
ccggtattgcagcatctgctcgacttcccacgcaagaagtccggcccaccgcgcgtactg
atcctcaccccgacgcgcgagctggcgatgcaggtagccgatcaggcacgtgaactggct
gctcatacttcgctggatatcgccaccatcactggcggcgtcgcgtatatgaaccacgcg
gaagtcttcagcgaaaaccaggacgtggtcgtcgccaccactggccgtctgctgcaatac
attaaagaagaaaacttcgactgccgcgcagtagagacactgatcctcgatgaagccgac
cgtatgctcgacatgggctttgcacaggacatcgaaacgatctctgctgagactcgctgg
cgcaaccagacgttgctgttctccgcaacgttggaaggcgatgctatccgcgaattcgca
gaacgcattctgaaagaaccggtagaagtcgaagctgatccatcacgccgtgaacgcaaa
aagatcctgcagtggtattaccgcgccgacgacgtgcagcataaaaccgctctgttggtg
cacttgctgcaacaaccggacgtacagaaatccgtcatcttcgtgcgtaaacgtgagcgc
gtgcatgagctggcagcctggctgcgcgaggccggtatcaatacctgttacctcgaaggc
gaaatggtgcaggccaagcgtaacgaagcggtaaaacgcatgatggatggccgtgtcaac
gtactggtcgccaccgacgttgctgcccgtggtctggatatcctggatatcacccacgtg
ttcaactttgatatgccgcgcaccgcggacacctatctgcaccgtattggccgtaccggt
cgtgctgggcgcaaggggactgcaatctcgctggttgaagcacatgaccacctgttgttg
ggcaaagtcggacgttacctgaacgagccattgaaagcgcgggtaatcgaagaactgcga
ccttcaaccaaagtgccaagcgagaaaagcaacggtaagccttcgaagaaagtgattgcc
aaacgcgcagccgacaaagaaaagaacaaagaaaaagccaaggtgaaagtacgtcatcgc
gatgcgaagaacgtgggcaaacgccgccaaccaaaggccaaacctgaagacaacggcgcg
aagtaa
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