Serratia grimesii: SGBXF1_03885
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Entry
SGBXF1_03885 CDS
T09948
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sgri
Serratia grimesii
Pathway
sgri03030
DNA replication
sgri03430
Mismatch repair
sgri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SGBXF1_03885 (dnaE)
03430 Mismatch repair
SGBXF1_03885 (dnaE)
03440 Homologous recombination
SGBXF1_03885 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgri03032
]
SGBXF1_03885 (dnaE)
03400 DNA repair and recombination proteins [BR:
sgri03400
]
SGBXF1_03885 (dnaE)
Enzymes [BR:
sgri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SGBXF1_03885 (dnaE)
DNA replication proteins [BR:
sgri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SGBXF1_03885 (dnaE)
DNA repair and recombination proteins [BR:
sgri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SGBXF1_03885 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
SMZ58230
LinkDB
All DBs
Position
1:complement(4090247..4093735)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSDVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAGPIIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDNYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVADDFDAHEIRVAIHDGFTLDDPKRPRNYTPQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLILKSKEGL
EDRLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKTGLEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKRGNRIGICT
LDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTARELMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVELEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgttcatagtgactattccatgattgatgga
ttagccaagatcggaccgctggtgaaaagagccgccgcgttagccatgcctgctttggca
attaccgactttaccaacctatgcggtttggtgaagttttatggcagcgcgcacggcgcc
gggatcaaaccgatcatcggtgcagattttcacgtgcaaagcgacgtgctgggtgatgag
ctggcacagctcactgtgctggctgccaataatgagggttaccaaaacctgacgctgttg
atctcccgcgcttaccagcgtggttacggtgccgctggcccgatcatcgatcgtgactgg
ctgattgagcaccgggaagggcttatcctgctctctggcgcacgtcagggtgatgtcggt
aagtttttactgcgcggcaaccagcctcaggtggagcaatgcctggagttctaccaacag
tacttccctgacaactattatctcgagctgatccgcaccggacggccagacgaagaaaac
tatttgcatgccgcggtggcgctggctaccgagcgcgggctaccggtggttgccactaac
gacgtacgttttctggtcgcggatgactttgatgcccatgagatccgcgttgctatccat
gacggttttactttagacgatcccaaacgcccgcgtaactacacgccgcagcaatacatg
cggagtgaagacgagatgtgtgagctgtttgccgacattccagaagcgttgctcaacagc
gtcgaaattgccaaacgctgtaatgtgaccattcgtctcggcgaatacttcctgccgcag
ttcccgaccggtgacatgaccaccgaggatttcctgatcctgaagtcgaaggagggcttg
gaagaccggttggagttcctgttccctgatccggaagtgcgtgctcagcgccgccctgaa
tatgacgaacgtctggatattgagctgaaagtgatcaaccagatgggcttcccaggttac
ttcctgatcgtaatggagttcatccagtggtcgaaagacaataacgtgccggttggcccg
ggccgtggctccggtgccggttcgttagtcgcctatgcgctgaaaatcactgatctcgac
ccgttagaatttgatctgctatttgaacgtttccttaatccggaacgtgtttcgatgccc
gactttgacgtcgacttttgcatggaaaaacgcgacctggtgatcgatcacgtggcggaa
atgtacggtcgtgaagcggtatcacagatcatcacctttggtaccatggcagcgaaagcg
gttattcgcgacgtggggcgtgtgttgggccacccgtatggcttcgtcgaccgcatttcc
aagctggtgccacctgatccggggatgacgctggaaaaagcctttgctgctgagcctcaa
ctgccggaaatatacgaggccgatgaagaagtcaaagcgctgatcgacatggcgcgaaaa
ttggaaggggtgacacgtaacgccggtaagcacgccggtggtgtggtcatcgcgccgacg
aaaatcactgactttgccccactgtactgtgatgccgaaggccaacatccagtaacccag
tttgacaagaacgacgtggaatacgccggtctggtgaagttcgacttcctcggcctgcgt
actctgacgatcatcgactgggcgctggcaatgatcaacgcccgccgagccaaaaccggg
ctggagccgatcgatatcgccgccatcccgctcgaagacaagaaaagcttcgacatgctc
cagcgttcggagaccacagcggtcttccagcttgaatcacgcggcatgaaagatctgatc
aaacgcctgaagcccgactgcttcgaagatatgatcgcattggtggcgctgttccgccca
gggccgctgcagtcaggcatggttgataactttatcgaccgtaaacacggccgagaagag
atatcctatccggatatccagtggcagcatgagtcacttaagcctgtgctggagccaacg
tacggcatcatcctgtatcaagaacaggttatgcagattgcccaggtgctggctggctac
tcgctgggcggcgcggacatgttgcgtcgtgcgatgggtaaaaagaacccggtagaaatg
gccaagcagcgtggcggtttcgaagatggggcaaaatcgcgcgggatcgacggtgagctg
tcggtaaaaatctttgacctggtggagaaattcgccggttacggtttcaacaaatcgcac
tctgccgcctatgcattggtgtcataccaaacattgtggttgaaagcacactatcccgct
gagtttatggcggcggttatgactgccgatatggacaacaccgataaggtggtgggattg
gtggatgagtgctggcgtatgggcctgaaaatcctgccgccggatatcaacagcgggcag
taccatttccacgttaacgatgaaggtgagatcgtttacggcatcggcgccatcaaaggt
gtgggtgaagggccgattgaagctattcttgaagcacgtaacagcggcgagcaaggctac
tttaaagaccttttcgatttgtgtgcacgctcagatatcaaaaaactgaaccgtcgcatt
cttgaaaagctgatcatgtccggggcattcgaccgtcttggaccgcaccgtgctgcgctg
atgaattcattgggcgatgcgttgaaagcggccgatcagcatgccaaagccgaagctatc
ggtcaggtggacatgtttggcgtactggcggaagcgccagagcaagtggagcaatcctac
gctaacgtgcctcgctggcaggagcaggtggtactggacggtgagcgggaaaccttgggg
ttatacctcaccgggcacccgatcacccagtacctgaaggaaatcgaacgctatgccggt
ggccagcgtttgaaagatatgcacccgacggatcggggcaaaatgacgaccgctgttggg
ctggtgattgcctcgcgggttatggtcaccaagcgcggtaatcgcatcggaatctgtacc
ctggatgaccgttctggccgtctggaagtgatgttattcaccgatgcgttagaaaaatac
cagcatttattggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgatgac
tttagcggtgggcttaaaatgaccgcccgtgagctaatggacatcagtgaagcccgtgaa
aaatacgctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtctttggaaccccatcgctcggggacgattccagtgcatctttac
tatcaacgggaagatgcgcgggccaagctgcgttttggcgcaacctggcgcgtgacgcca
accgaccgcttattgattgatttgcggactttggtaggtaatgagcaggtggaactggaa
tttgactaa
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