Serratia grimesii: SGBXF1_03927
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Entry
SGBXF1_03927 CDS
T09948
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sgri
Serratia grimesii
Pathway
sgri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SGBXF1_03927 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgri03400
]
SGBXF1_03927 (recB)
Enzymes [BR:
sgri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SGBXF1_03927 (recB)
DNA repair and recombination proteins [BR:
sgri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SGBXF1_03927 (recB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SMZ58269
LinkDB
All DBs
Position
1:complement(4134538..4138098)
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AA seq
1186 aa
AA seq
DB search
MTETAPQRLDPLTLPLFGERLIEASAGTGKTFTIGALYLRLLLGLGQAAAFPRPLTVEEI
LVVTFTEAATEELRGRIRNNIHGLRIACVRGKGAKCDNPLFVSLMEEIENLPDAAAQLLA
AERQMDEAAIYTIHGFCQRMLTHNAFESGILFEQTLVQDELPLRRQACADFWRRHCYPLP
IGVARAVSQEWSGPEALLADLSGYLHGEAPMLRRPPKDDETVLVRHEQIVARIDAIKAQW
LAVAGELETLISQSGVDKRSYSSKHLPNWLHKVGEWVVLETQDYQLPKELDKFRQSVLLE
KTKKGEPPRHALFVAIDELFDEPLTLRDLIMARALSEIRQSIQQEKRQRAELGFDDLLSR
LDSALCSEGGDRLAQAIRQRYPVAMIDEFQDTDPQQYRIFQKLYVGRPECGLLLIGDPKQ
AIYAFRGADIFTYMRARSEVSAHYTLETNWRSSPAMVNSVNHLFAQVEKPFLFGQIPFIE
VAAAEKNRGLAFELQNQLQPAMQFWLQPGEGVGVSEYQQLMARLCATQIRDWLSAGQNQQ
AWLVNGDKRRAVQASDITVLVRSRNEAALVRDALSALAIPSVYLSNRDSVFDTPEAKDLL
WLLQAVLAPEQERTLRSAMATGLMGLDAPELDGLNHDERAWDMLVDEFDEYRTHWLRRGV
LPMLREVMKRRHLAENLLASFGGERRLTDVMHLGELLQEASAQLDSEHALVRWLAQQIAQ
PNRQSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQVLYHDRQSFQAL
LDLNANEESIEWAEEERLAEDLRLLYVALTRSVYHCSIGIAPLIQGTRKKQGDTDLHRSA
LGYLVQAGQTGDADYLQQCLQRLVGAGIALSPVNTLDEEPWQPHSPALTELAVKHFSRQV
QDFWRVTSYTGLQQHGAGLMQDLLPRLDVDAAGELAQDSEPALTPHTFPRGAGPGTFLHS
LFETIDFTQPLDEAWLLDQLQQQGFAEHWQPVLLAWMQVLLNTPLNDAGVALSSLALQHK
QAELQFYLPIEQLLQARELDKLVKRYDPLSARCPELDFQQVQGMLKGFIDLVFCWQGKYY
LLDYKSNWLGEDSSAYTQPAMEQAMAEHRYDLQYQLYTLALHRYLRHRLPDYDYQRHFGG
VIYLFLRGVDAQHPGNGIFACRPEAKLVEGMDLLFRGETIAAEDAS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaacggccccgcagcggcttgatccactcacattgccgctgtttggcgagcgg
ctgatagaagcgtcggcggggaccggcaaaacctttaccattggtgcgctgtatctgcgc
ctgctgcttggccttggccaggcagcggcctttccccggccactgacggtggaagaaatc
ctggtggtgacctttaccgaggctgccaccgaggaattacgcggacgtattcgtaataac
attcatgggctgcgtatagcctgtgtgcgcggtaaaggcgctaaatgtgacaacccattg
tttgtctcattgatggaagaaattgaaaatcttccggatgccgccgcgcaattgctggcc
gccgaacggcagatggacgaagcggcgatttataccatccacggtttttgccaacggatg
ctgactcacaatgccttcgaatctggcattctgtttgaacagacgttggtgcaggatgag
ctgcctctacgccgtcaggcctgtgcggacttctggcgtcgtcattgttatccattgccg
attggtgttgcccgtgcggtgagtcaggagtggagcggcccggaagcgctgttggccgat
ctttccggctatttgcatggcgaagcgccaatgctgcgtcgaccgccgaaagatgatgaa
acggtgctggtgcgccatgaacaaattgtcgcgcgtattgatgccatcaaagcgcagtgg
ctggcggtcgcgggcgagctggaaacgctgatcagccagtccggggttgataaacgcagt
tacagcagcaaacacctgcctaactggttgcacaaagtcggtgaatgggtcgtgctggaa
acccaggactatcaactgccgaaagagctggataaattccgccagtcggtactgctggaa
aaaaccaaaaaaggcgaaccgccacgccatgcattgttcgtggcgatcgacgaactgttt
gatgaacccttgacgctgcgtgacttgatcatggcacgggcgctgagtgagatacgccag
tctatccagcaagaaaaacgccagcgtgcggagctgggtttcgacgacttgctaagccgc
ctggatagcgcattgtgcagcgaaggcggtgatcggctagcgcaagcaatccgccagcgt
tacccggtagcgatgatcgatgagttccaggatacagacccacagcaataccgcatcttc
caaaaactctatgttggcagaccggaatgcggcctgctgctaataggtgatcccaagcag
gcgatttatgccttccgtggcgccgacatttttacctatatgcgcgctcgttcagaggta
agcgcccactatacgcttgaaaccaactggcgctcgtcaccggcgatggtaaacagtgtt
aaccatctgtttgcacaggtggaaaaacctttcctgtttggccaaattccctttattgag
gttgccgccgccgagaaaaatagggggttggcatttgagctacaaaaccagttgcaaccg
gcgatgcagttctggttgcaaccgggggaaggtgtgggcgttagtgagtaccaacaattg
atggcacgcttgtgcgctacgcaaatccgtgactggctcagcgctgggcaaaaccagcag
gcctggttggtgaacggtgataaacggcgtgcggtgcaggcatcggatattactgtgttg
gtacgtagccgcaatgaggcggcgttagtacgtgatgcgctcagtgcgctggcgatcccc
tccgtctatttgtccaatcgagacagcgtgtttgatacaccagaggccaaagatttgctg
tggctgttgcaagctgtgttggctccggaacaggagcgtacactgcgcagcgctatggcg
acagggctgatggggctggatgctccggagctcgacggtttgaaccatgacgagcgcgcc
tgggatatgttggttgacgagtttgatgagtaccgtacgcattggctacgccgtggcgta
ttgccgatgctgcgtgaggtgatgaaacggcgtcatttggcagaaaacttactggccagc
tttggtggtgagcgccggttgaccgacgttatgcatctgggggaactgttgcaggaagcc
tcagcgcagctcgacagcgagcatgcgttggtgcgctggctggcgcagcagattgctcaa
cccaatcgccaatccgacaaccagcagttgcggctggaaagcgaccgtcacctggttcaa
gtgatcaccatccataagtctaaagggttagagtttgatttggtgtggttgccgtttgtc
ggtaattttcgccaacagcagcaggtgttgtaccacgatcgccaaagcttccaggccttg
cttgacctcaatgccaacgaagaaagtatcgaatgggcggaggaagagcggctggcggag
gatttgcgcttgctatatgtagcgctgactcgttcggtctaccactgtagcatcggtatt
gcaccgttgattcagggtacacgtaagaaacagggtgacaccgatttacaccgcagtgcg
ctaggctatctggtacaagctggccagaccggcgatgcggactatttacagcaatgtttg
caacggctggtcggtgcggggatcgcgctgtcgccagttaacacgctggatgaagaaccc
tggcaaccacatagcccggcgctaaccgaactggcagtaaaacatttctcgcgtcaggta
caggatttttggcgtgtgaccagttatacaggcctgcaacagcacggtgcgggcctgatg
caagatttgttaccacggctggatgttgatgccgcaggcgagttagcgcaggacagtgag
ccagcgcttacaccgcatacctttcctcgtggcgctggtccggggactttcctgcacagc
ctgtttgaaacgatcgattttacccaaccgctcgatgaggcgtggttactggatcagttg
cagcagcagggttttgccgagcattggcagccggtactgctggcgtggatgcaagtgttg
ttgaacactccacttaatgatgccggtgtcgcgctgtcgtcgcttgcgctgcagcataaa
caggccgaactgcagttttatctgccgatcgagcagctgttgcaggcgcgtgagttggat
aagctggtaaaacgttacgatccgctttctgcccgctgccctgagttggatttccagcag
gtgcagggaatgctgaaaggatttatcgacctggtgttctgctggcaggggaaatattac
ctgctggactataaatcaaactggttgggcgaagacagcagtgcttatacccaaccggcg
atggagcaggcgatggcagaacatcgttacgatttgcagtaccagctctacacactggcc
ctgcaccgctatctgcgtcataggttgccagattatgattatcagcggcacttcggcgga
gtgatttatctgttcctgcgcggagtggatgcacagcatcctggcaacggcatttttgcc
tgccgcccggaagcgaaattggtggaaggtatggacctgttattccgcggcgaaaccatt
gcggcggaggatgcatcatga
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