Serratia grimesii: SGBXF1_04081
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Entry
SGBXF1_04081 CDS
T09948
Symbol
hrpB_2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sgri
Serratia grimesii
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgri03019
]
SGBXF1_04081 (hrpB_2)
Enzymes [BR:
sgri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SGBXF1_04081 (hrpB_2)
Messenger RNA biogenesis [BR:
sgri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SGBXF1_04081 (hrpB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
AAA_22
DUF2934
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SMZ58422
LinkDB
All DBs
Position
1:complement(4309313..4311751)
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AA seq
812 aa
AA seq
DB search
MSSLPVSAVLDELLTALQSAPQVLLHAPTGAGKSTWLPLQILAKAGLPGRIIMLEPRRLA
AKNVAYRLAQQLGEEPGQTVGYRMRAESKSGPHTRLEVVTEGILTRMLQQDAELQGVSLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNARLAQLLPQAPVVVSAGRS
FPVERQYQPLTSHQRLEDGVASAVKRLLSEQTGSLLLFLPGVAEINRVLERLSGDVAADI
ELCPLYGALPLAQQQKAIQAAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARYDV
RNGLTRLVTQRISQASMIQRAGRAGRLEPGICWHLFAKEQAERAAEHAEPEILQSDLAAF
WLELLQWGCHEVGQLTWLDRPPEPALAAARRLLQHLGATDDGDKLTARGRQMAILGCEPR
LAAMLTQGAERSADGLATAAALAALLEEPPRRGQMDIGYWLSRPQPNWQRRATQLARHLQ
VKAGQVDVDMAPSLLALAFTDRIAQRRGQDGRYLLANGMGAAMNQDEALSRAPWLIVPSL
LQGHNSPDARILLALPVDIEVLAAQLPAIVSQQTAVEWDEEKGTLRAWKRQQIGRLTLRA
QPLAKPADEELQQALLNWVRAQGVAVLNWDTAAEQLRLRLQCAQNWLPEAAWPPVDDDAL
LASLEQWLLPSLSGVRDMRGLKQVNIAEALVRLLSWQQKQRLDNALPTHYTVPTGSRLPI
RYDAGKPPALAVRLQEVFGEQRSPMLAEGRIPVVLELLSPAHRPLQITGDLAAFWQGAYK
EVQKEMKGRYPKHVWPDDPANTAPTRRTKKYQ
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttcactgcccgtcagcgcggttcttgatgaattgctcactgcgctgcaatccgcc
cctcaggtgttattgcatgcaccgaccggtgccggtaaatcgacctggctgccgctgcag
atcctggccaaggctgggctaccggggcgaattatcatgctcgaaccgcggcggttggcg
gcgaaaaacgtggcataccgattggcgcagcaactgggggaggagcctggtcagacggtg
ggttaccgcatgcgtgccgaaagcaaaagtgggccgcatacccggctggaagtggtgacc
gaaggcattcttacccgcatgttgcagcaggacgctgagctgcagggcgtttcgttagtg
attctcgatgaattccatgagcgtagcctgcaggccgatctggcattagcgctactcttg
gacgtacagcagggtctgcgcgacgatttaaagctgctgatcatgtcagcaacgctggat
aacgctcgtctggcgcagttgttgccgcaggccccagtagtggtatccgctggtcgaagc
ttccctgttgagcgtcaatatcaaccgttaaccagtcatcaacggctggaggacggtgtg
gcgagcgccgttaagcgcctgttgtctgagcagacgggatccttactgctgttcttgcct
ggtgtggctgagattaatcgggtactggagcgtctgagcggcgacgtcgcggccgatatc
gaattatgcccgctgtacggtgccttgccgttggcgcagcagcagaaagcgattcaggcg
gcaccggcagggcggcgaaaggtggtattggcaaccaacatcgctgaaaccagcctgacc
atcgaaggtattcggttggtggtagacagtggcctggagcgtgtggcgcgttatgacgtg
cggaacggccttacgcgattggtgacacaacgcattagccaggcatcaatgattcagcgt
gctggccgtgccggtcgtctggaaccgggcatttgctggcatctgtttgccaaagagcag
gccgagcgggcggcggaacatgctgagccggaaatcttgcaaagtgatctcgccgctttc
tggctggagttgctgcaatggggttgtcatgaagtagggcaattgacctggcttgaccgg
ccacctgagccagcgctggcggcagccagaaggttgttgcagcatcttggcgccaccgat
gacggcgataaactgactgcacgcggtcgccagatggctattctgggttgtgaaccgcgt
ttggcggcgatgctaacccaaggagcagagcggagtgctgatggactggcaacggccgct
gcattagctgcgttgctggaagaaccaccgcgcagaggacaaatggacattggttactgg
ctgagccgcccgcagccgaactggcaacgacgcgccactcagcttgcccggcatttgcag
gtaaaggcgggacaggtggatgtggatatggcgccgagcctcttggcgttggcgtttact
gaccgcattgctcaacggcgtggtcaggatggtcgttacctgctggctaacggcatgggt
gcagcgatgaatcaggatgaagcattatcacgagccccttggctgatcgtacccagcctg
ctgcaagggcataacagccccgatgcacgtattttgctggcactaccggtagacattgag
gttttggcggcgcaactgccggcgatcgtttcccagcaaaccgcagtggagtgggacgag
gaaaaaggcacgttgcgtgcctggaagcgtcagcagattggccgtttgacgctgcgcgca
caaccattggccaaaccggctgacgaagagttacaacaggcgttgctcaattgggttcgt
gcccaaggtgtcgcagtgctgaactgggatactgccgctgaacagttgcgcctgcgtttg
cagtgcgcacaaaactggttgccagaggccgcctggccgccggtcgacgatgatgcgttg
ctggcatcgttggagcaatggttgttgccgtcgctgagtggcgtacgtgacatgcgtggg
ttaaaacaggtgaatattgctgaggcgttggtgcggttgttgagctggcagcaaaagcag
cggctggataatgcgctacccactcattacactgtgccaaccggcagccggttaccgatc
cgttatgacgctggcaaaccacctgcgttggcagtgcgtctgcaagaagtgtttggtgaa
cagcgcagtccgatgctggcagaaggtcgcatcccggtggtgcttgagttactctcaccg
gcgcacaggccattacaaatcaccggcgatctggcggcgttttggcagggggcctacaaa
gaagtgcaaaaagagatgaaagggcgttacccgaagcacgtgtggccggacgacccggcg
aataccgcacctacgcggcgcacgaaaaagtatcagtaa
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