Streptomyces griseoincarnatus: UBV09_19130
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Entry
UBV09_19130 CDS
T11026
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgro Streptomyces griseoincarnatus
Brite
KEGG Orthology (KO) [BR:
sgro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgro03016
]
UBV09_19130
Enzymes [BR:
sgro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
UBV09_19130
Transfer RNA biogenesis [BR:
sgro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
UBV09_19130
Prokaryotic type
tRNA splicing ligases
UBV09_19130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WPW20672
LinkDB
All DBs
Position
4217599..4218792
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AA seq
397 aa
AA seq
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MSYVELPGAKVPIRMWTDPATVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHTEPVDPG
KFHGLATAGWDDFWKRFDRVAEAVHFRKGRATTQMGTLGQGNHFVEVCIDTSGSVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQNLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
TIMMALLKDVVRKEFKKAKPTFEQEISAHHNYVAEERYEGMDLLVTRKGAIRAGSGEYGI
IPGSMGAGSYIVKGLGNDKSFNSASHGAGRRMSRNAAKRRFTAKDLAEQTQGVECRKDSG
VVDEIPSAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggaactgccgggcgcgaaggtgccgatccgtatgtggacggacccggcg
acggtcgaggagggcgcgctccagcagctgcgcaacgtcgccaccctgccgtggatcaag
ggcctggccgtcatgccggacgtccactacggcaagggcgcgacggtcggctcggtcatc
gcgatgcggggcgcggtgtgcccggctgcggtgggcgtggacatcggctgcggcatgtcc
gcggtgaagacgtccctgacggcgaacgacctgcccggcgacctgtcccggctgcgctcg
aagatcgagcaggcgattccggtggggcgcgggatgcacacggagcctgtcgaccccgga
aagttccatgggctcgccaccgccgggtgggacgacttctggaagcggttcgaccgggtg
gcggaagcggtgcatttccgcaagggacgggcgactactcagatgggaacccttggccag
ggaaatcacttcgttgaggtatgcatcgatacgtccggttccgtctggctcatgctccac
tccggatcgcgcaacatcggcaaggaactcgccgagcaccacatcggcatcgcgcagaag
cttccgcacaaccagaacctggtcgaccgggacctcgccgtcttcgtcgcggacacaccg
cagatggcggcgtaccgcaacgacctgttctgggcccaggagtacgccaagtacaaccgc
acgatcatgatggcgctcctgaaggacgtggtccgcaaggagttcaagaaggcgaagccc
accttcgagcaggagatcagcgcgcaccacaactacgtggccgaggagcgctacgagggc
atggacctgctggtcacccgcaagggcgcgatccgcgcgggctccggcgagtacgggatc
atcccgggttcgatgggcgccggctcgtacatcgtgaagggcctggggaacgacaagtcg
ttcaactcggcgtcgcacggcgccggtcggcggatgagccggaacgcggccaagcggcgg
ttcacggccaaggacctggcggagcagacccagggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgagcgcgtacaagccgatcgagcaggtcatcgaccagcagcgc
gacctcgtcgaggtcgtggcgaagctgaagcaggtcgtctgcgtcaagggctga
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