Streptomyces griseoincarnatus: UBV09_20010
Help
Entry
UBV09_20010 CDS
T11026
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgro Streptomyces griseoincarnatus
Pathway
sgro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UBV09_20010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgro03021
]
UBV09_20010
03400 DNA repair and recombination proteins [BR:
sgro03400
]
UBV09_20010
Enzymes [BR:
sgro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UBV09_20010
Transcription machinery [BR:
sgro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UBV09_20010
DNA repair and recombination proteins [BR:
sgro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UBV09_20010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TarH
Motif
Other DBs
NCBI-ProteinID:
WPW20826
LinkDB
All DBs
Position
4398161..4402072
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGEMRDLKGE
GRSFASVAEAIMAFDAGELSLQSKIDIRFPVGTIPPRGWTPPVGEDGETEGGAEWQQGDP
FRLTTTLGRALFNELLPEDYPFVDYEVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGF
YWATRSGVTVAISDVVVPEAKKEIVKGYEAQDEKVQKQYERGLITKDERTQELINIWTKA
TNEVAEAMNDNFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFR
EGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLRLKI
ASRDADGVLRKEGDVETSVYARCLAEDIVVDGQVLAPAGTDLGDVLIEELVQRGVEEVKT
RSVLTCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAG
DDITQGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKLVVTPDDGSDETAYPISK
RAKVLVSEGEHVEVGQQLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKH
IEIIIRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVQEGGHPASGRPQLMGITKA
SLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVE
PTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggcctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagacgatcaactaccgcacgctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgtgccaaggtgcgccgtgagcggatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggtgtcccgagccggctgggctacctgctcgacctg
gccccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacgtacgtggac
gaggagcgccgcacccgcgacctgccgtcgctggaggcccacgtctccgtcgagcgtcag
cagatcgagaaccgccgggacgccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggc
gccgagcgtgagatgaagcagctgcgcgaccgcgcgcagcgcgagatcgaccgcctcgac
gaggtgtggagccggttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggcgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagaagctccgcgagatc
atccgcaccggcaagggccagaagaagacccgcgccctgaagcggctgaaggtcgtctcc
gcgttcctgcagacctccaacagccccaagggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcg
ctgttcgacaacggccgtcgtggccgtccggtcaccggtccgggcaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctggaagaggtcatcgcggagcacccggttctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgcccggtgacgatgccgacccaggac
atggtcctcggtctgttcttcctcaccaccgacggcgagatgcgcgacctcaagggcgag
ggccgttccttcgcctcggtcgcggaggcgatcatggccttcgacgcgggcgagctctcg
ctccagtcgaagatcgacatccgcttcccggtcggcaccatcccgccgcgcggctggacc
ccgccggtgggcgaggacggcgagaccgagggcggcgcggagtggcagcagggggacccg
ttccgcctgaccaccaccctgggccgggcgctcttcaacgagctgctgcccgaggactac
ccgttcgtcgactacgaggtcggcaagaagcagctctccgagatcgtcaacgacctcgcc
gagcgctacccgaaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttc
tactgggcgacccgttccggcgtcaccgtggccatctccgacgtcgtcgttcccgaggcg
aagaaggagatcgtcaagggctacgaggcgcaggacgagaaggtccagaagcagtacgag
cgcggtctgatcaccaaggacgagcgcacgcaggagctcatcaacatctggaccaaggcg
accaacgaggtcgccgaggcgatgaacgacaacttcccgaagaccaacccgatcttcatg
atggtgaactcgggtgcacgaggcaacatgatgcagatgcgtcagattgccggtatgcgt
ggtctggtgtcgaacgcgaagaacgagaccatcccgcgtccgatcaaggcgtcgttccgt
gagggcctgtccgtgctggagtacttcatctccacgcacggtgcccgtaagggtctggcg
gacaccgctctgcgtaccgccgactcgggttacctcacccgtcgtctggtcgacgtctcc
caggacgtcatcatccgcgaggaggactgcggcaccgaccgcggtctgcgtctcaagatc
gcgagccgggacgcggacggagtgctccgcaaggagggcgacgtcgagacgtccgtgtac
gcgcgctgcctcgccgaggacatcgtcgtcgacgggcaggtgctggccccggccggcacc
gacctgggcgacgtcctcatcgaggagctcgtccagcgcggcgtcgaggaggtcaagacc
cgctcggtcctgacctgcgagtccgccgtcggcacctgcgcgatgtgctacggccgttcg
ctggccacgggcaagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtcc
atcggtgagcccggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggt
gacgacatcacccagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaag
ggtgtcgccccgatctccgaggcctccggccgcgtgcggatcgaggagacggagaagacg
aagaagctcgtcgtcaccccggacgacggcagcgacgagacggcgtacccgatctcgaag
cgcgccaaggtcctggtctccgagggcgagcacgtcgaggtgggccagcagctcaccgtg
ggtgccaccaacccgcacgacgtgctgcgcatcctgggtcagcgtgccgtccaggtccac
ctggtcggcgaggtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcac
atcgagatcatcatccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcc
gagctgctgcccggcgaactggtcgagcggtcgaagttcgagaccgagaaccgtcgtgtg
gtccaggagggcggtcacccggcctccggccggccgcagctcatgggcatcaccaaggcc
tcgctggccacggagtcctggctgtcggcggcgtccttccaggagacgacgcgagtcctc
acggacgcggcgatcaacgccaagtccgactcgctcatcggcctcaaggagaacgtcatc
atcggtaagctcatcccggccggtacgggtctgtcccgctaccgcaacatccgggtcgag
ccgaccgaggaggccaaggccgcgatgtactcggccgtcggctacgacgacatcgactac
tcgccgttcggcaccggctccggccaggccgttccgctggaggactacgactacggtccg
tacaaccagtaa
DBGET
integrated database retrieval system
