Streptomyces griseoincarnatus: UBV09_22965
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Entry
UBV09_22965 CDS
T11026
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgro Streptomyces griseoincarnatus
Pathway
sgro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UBV09_22965 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgro03400
]
UBV09_22965 (ligD)
Enzymes [BR:
sgro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UBV09_22965 (ligD)
DNA repair and recombination proteins [BR:
sgro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UBV09_22965 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
SPOR
Motif
Other DBs
NCBI-ProteinID:
WPW21366
LinkDB
All DBs
Position
complement(5026635..5027516)
Genome browser
AA seq
293 aa
AA seq
DB search
MAPITEVEGRRLPLSNLEKVLYPATGFTKAEVLHYYATVAEVLLPHLRERPVSFLRYPDG
PDGQVFFTKNVPPGTPDWVTTAEVPRSEGPARMVLVEDLPSLMWAANLVTEFHTHQWRIT
DPGEADRIVFDLDPGPPATVVHCCEVALWLRERLAEDGFEAYAKTSGSKGLHLLAAVRGS
SSEQVSEYAKALAVEAEKAMPRLVLHQMKRSLRPGKVFVDWSQNAARKTTAAPYTLRARA
EPLVSAPVTWQEVEDCRSPGGMALQAPDIPPRLQDFGDLLAPLLTPDEAGTLP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggctcccatcacggaggtggaggggcgacggctcccgctcagcaatctggagaaggtg
ctgtatcccgccaccggcttcaccaaggcggaggtcctgcactactacgcgaccgtggcc
gaggtgctgctgccgcatctgcgggagcggccggtgtcgttcctgcgctatccggacggg
cccgacgggcaggtgttcttcaccaagaacgtgccgcccggtacgcccgactgggtcacg
accgccgaggtgccgaggtcggaggggcccgcgcggatggtgctggtggaggatctgccg
agcctgatgtgggcggcgaacctggtcacggagttccacacccaccagtggcggatcacc
gacccgggcgaggcggaccgcatcgtgttcgacctggacccggggccgccggcgacggtc
gtgcactgctgcgaggtggcgctgtggctgcgcgagcggctggccgaggacgggttcgag
gcgtacgcgaagacgtccgggtcgaaggggctgcacctgctggcggcggtacgaggctcc
tcttccgaacaggtgtccgaatatgccaaggcgctggccgtggaggcggagaaggcgatg
ccccggctggtgctgcaccagatgaagcgcagcctgcggccggggaaggtcttcgtcgac
tggagccagaacgcggcgcgcaagaccacggccgccccctacaccctgcgggcgcgcgcc
gagccgctcgtgtcggcgccggtgacctggcaggaggtcgaggactgccggtcgccgggc
gggatggcgctgcaagcgcccgacatcccgccacggctccaggacttcggcgacctgctg
gcaccgctactgaccccggacgaggcgggcacgctgccctga
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