Streptomyces griseoaurantiacus: V9K83_13900
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Entry
V9K83_13900 CDS
T10677
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgrs Streptomyces griseoaurantiacus
Brite
KEGG Orthology (KO) [BR:
sgrs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgrs03016
]
V9K83_13900
Enzymes [BR:
sgrs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
V9K83_13900
Transfer RNA biogenesis [BR:
sgrs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
V9K83_13900
Prokaryotic type
tRNA splicing ligases
V9K83_13900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WWY85225
LinkDB
All DBs
Position
complement(3210928..3212121)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYVEVPGAKVPIRMWTDPASVEDAAMGQLRNVATLPWIKGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQSIPVGRGMHEAPIDPS
RFHGLATAGWEGFWERFGGVAEAVKFRQERATKQMGTLGGGNHFVEVCTDSNGSVWLMLH
SGSRNIGKELAEHHIGVAQKLAHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
TLMMALLKDVVRKEFKKARPTFEQEISCHHNYVAEERYEGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEAAFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgaggtaccgggcgcgaaggttccgatccggatgtggaccgacccggcg
tcggtcgaggacgccgcgatgggacagctgcgcaatgtggcgacgctgccgtggatcaag
gggctggcggtcatgccggacgtccacttcggcaagggcgccacggtcggctcggtcatc
gcgatgcggggcgcggtctgcccggcggcggtgggcgtggacatcggctgcggcatgtcg
gccgtgaagacgtccctgaccgcgaacgacctgcccggcgacctctcccgcctccgctcg
aagatcgagcagtccatcccggtgggccgcggcatgcacgaggccccgatcgacccctcc
cgcttccacgggctggcgacggcggggtgggaggggttctgggagcggttcggcggggtc
gcggaggcggtcaagttccgtcaggagcgtgccacgaagcagatgggaacgctcggcgga
ggaaaccactttgtcgaagtctgcacggattcgaacggttccgtctggctcatgctgcac
tccggctcccggaacatcggcaaggagctggccgagcaccacatcggcgtggcccagaag
ctcgcgcacaaccagggcctggtcgaccgcgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcccaggagtacgcgaagtacaaccgc
accctgatgatggcgctgctgaaggacgtcgtccgcaaggagttcaagaaggcgcggccc
accttcgagcaggagatctcctgccaccacaactacgtggcggaggagcggtacgagggc
atggacctgctggtcacccgcaagggcgcgatccgggccggctccggcgagtacgggatc
atcccgggttccatgggcaccggctcgtacatcgtcaagggactcgggaacgaggccgcg
ttcaactcggcctcgcacggggcgggtcggcggatgagccgcaacgcggcgaagcgccgc
ttctcgacgaaggacctggaagagcagacgcggggcgtggagtgccgcaaggactccggt
gtcgtggacgagatcccgggcgcctacaagccgatcgagaaggtcatcgaccagcagcgc
gacctcgtggaggtcgtggcgaagctgaagcaggtggtgtgcgtcaagggctga
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