Streptomyces griseoaurantiacus: V9K83_17310
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Entry
V9K83_17310 CDS
T10677
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sgrs Streptomyces griseoaurantiacus
Brite
KEGG Orthology (KO) [BR:
sgrs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgrs03019
]
V9K83_17310 (hrpA)
Enzymes [BR:
sgrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
V9K83_17310 (hrpA)
Messenger RNA biogenesis [BR:
sgrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
V9K83_17310 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
T2SSE
NACHT
nSTAND_NTPase5
SLFN-g3_helicase
TsaE
DUF899
MetJ
AAA_16
PhoH
NTPase_1
SRP54
Motif
Other DBs
NCBI-ProteinID:
WWY85829
LinkDB
All DBs
Position
complement(3956955..3960962)
Genome browser
AA seq
1335 aa
AA seq
DB search
MSTHPAPALGALAPRLTELSLRDAHRLGRRLEGARKIRKPEARAAVLAEIEGEVARAEER
MAARRARVPVVTYPEQLPVSQKKDEIAEAVRDHQVVIVAGETGSGKTTQIPKICMELGRG
VRGMIGHTQPRRIAARTVAERVAEELDTPLGETVGWKVRFTDQVDPEATFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDSDEADRDQITAITDAVEELMAEGPGDILVFLS
GEREIRDTADALEKKKYRSTEVLPLYARLSHAEQHRVFQQHSGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFL
TRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPA
QKDVRKRLTETGRKLAQLPVDPRLARMVLEADRNGCAREVMVIAAALSIQDPRERPSEKQ
TQADQQHARFRDETSDFLAFLNLWRYIREQQKERGSSSFRRMCKQEFLNFLRIREWQDIY
TQLRTVAKQMGIRLNEQDAPEDRIHVSLLAGLLSHIGMKDVKESKDSSGAAGTSGPGGRK
DGGRNEYVGARNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNARIEPEWVEPLAG
HLLKHTYSEPHWEKDQAAVMAYEKVTLYGVPIVAQRKINYGRVDAEVSRELFIRNALVEG
DWRTHHKFFADNRKLLSEVEELEHRARRRDIVVDDETLFDFYEQRIPEHVVSGAHFDSWW
KHKRHEQPDFLDFEREMLIRESAQEVTKADYPDSWRQGPLKFRVTYQFEPGADADGVTVH
IPLQVLNQVTDEGFDWQIPGLREEVVTELIRSLPKPIRRNYVPAPNYARAFLERAVPLQE
PLTTTMARELKRMVGVPFEAEDFDWGRVPDHLRITFRIVDERRRKLAEDKDLQALKLRLK
PKARKALSQAAAATAERQGGESVERAGLTDWTIGTLSRVFETRRAGQPVKAYPALVDDGP
KADTVSVRLFDTEAEQTEAMWKGTRRLILRNIPVNPAKFASDKLTNAQKLALSANPHGSV
QALFEDCATAAADRLIADFGGPAWDEESYRKLYDKVRAEIVDTTVRTVGQVQQVLAAWQA
CERRLKAVRSPALLPNLADVRAQLDALVRPGFVTEAGLRRLPDLMRYLIAADRRLQQMPT
NVQRDTTRMEKVHEMRDEYAWLREQLPAGRPVPAAVTEIRWMIEELRVSYFAHALGTAYP
VSDKRIVKAIDAAAP
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcaccccgcccccgccctcggcgccctcgccccccgcctgaccgagctgtcg
ctgcgcgacgcgcaccggctcggacgcaggctcgaaggcgcccgcaagatccgcaaaccg
gaggcccgcgcggccgtcctcgccgagatcgagggcgaggtcgcccgggccgaggaacgg
atggcggcccggcgcgcccgcgtcccggtggtgacgtatcccgagcagcttccggtcagc
cagaagaaggacgagatcgccgaggccgtacgcgaccaccaggtcgtgatcgtggccggt
gagaccggctccgggaagaccacgcagatccccaagatctgcatggagctcgggcgcggt
gtccgcggcatgatcgggcacacccagccccgccggatcgccgcccgcacggtcgcggag
cgcgtcgccgaggagctggacaccccgctcggcgagaccgtcggctggaaggtgcggttc
accgaccaggtcgacccggaggccaccttcgtcaagctgatgacggacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctgggctatctcgcccagctgctgccgaag
cgccccgacctcaaggtcgtcatcacctccgcgacgatcgaccccgagcgcttctcccgg
cacttcggagacgctccgatcgtcgaggtcagcggccgtacgtatccggtggaggtgcgc
taccggccgctcctcgaggaggattcggacgaggcggaccgggaccagatcaccgcgatc
accgacgccgtcgaggagttgatggcggaggggcccggcgacatcctcgtgttcctctcc
ggcgagcgggagatccgggacacggcggacgcgctggagaagaagaagtaccggtccacg
gaggtgctgccgctgtacgcgcggctctcgcacgccgagcagcaccgggtcttccagcag
cactccggccgccggatcgtgctggcgacgaacgtggccgagacctccctgaccgtcccc
ggcatcaagtacgtcatcgaccccggcttcgcccgcatcagccgctacagccaccgcacc
aaggtgcagcgcctgccgatcgagccggtctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacctcggacggcatctgcatccggctctactccgaggacgacttcctc
acccgcccggagttcacggacgcggagatcctgcgcaccaacctcgcctccgtcatcctg
cagatgaccgcggccggcctcggggacatcgagaagttcccgttcatcgacccgccggac
caccgcaacatccgtgacggcgtccagctcctgcaggaactgggagcgttggacccggcg
cagaaggacgtccgcaagcggctgaccgagaccggccgcaagctcgcccagctccccgtc
gacccgcggctggcccggatggtgctggaggcggaccgcaacggctgcgcccgcgaggtg
atggtgatcgccgccgcgctgtccatccaggacccgcgcgagcgtccctccgagaagcag
acgcaggccgaccagcagcacgcccgtttccgcgacgagaccagcgacttcctggccttc
ctcaacctgtggcggtacatccgcgagcagcagaaggaacgcggctcctcctcgttccgc
cggatgtgcaagcaggagttcctcaacttcctgcgcattcgcgaatggcaggacatctac
acgcagttgcggacggtcgccaagcagatggggatccggctcaacgaacaggacgcaccc
gaggaccgcatccacgtctcgctgctcgccggtctgctctcccacatcggcatgaaggac
gtgaaggagtccaaggactcctccggcgcggccggcacctccggccccggcggccgcaag
gacggcggccgcaacgagtacgtgggcgcccgcaacgccaagttcgcgatcttcccgggc
tcggcgctgttcaagaagccgccgcggttcgtgatgtccgcggagctggtggagacctcg
cggctgtgggcgcgggtcaacgcgagaatcgagccggagtgggtcgaaccgctcgccggc
cacctgctcaagcacacgtacagcgagccgcactgggagaaggaccaggccgcggtgatg
gcctacgagaaggtcacgctgtacggcgtcccgatcgtcgcccagcggaagatcaactac
ggccgggtcgacgccgaggtcagccgcgaactgttcatccgcaacgccctggtggagggc
gactggcggacgcaccacaagttcttcgccgacaaccgcaagctgctcagcgaggtcgag
gaactggagcaccgggcgcggcgccgggacatcgtcgtcgacgacgagacgctcttcgac
ttctacgagcagcggatccccgaacacgtcgtctccggagcccacttcgactcctggtgg
aagcacaagcggcacgagcagcccgacttcctcgacttcgagcgggagatgctcatccgg
gagtcggcccaggaggtcaccaaggccgactaccccgactcctggcgccagggcccgctg
aagttccgggtgacgtaccagttcgagccgggcgcggacgccgacggcgtgaccgtccac
atcccgctccaggtgctcaaccaggtcaccgacgagggtttcgactggcagatccccggc
ctgcgcgaggaggtcgtcacggagctgatccgctccctcccgaagccgatccggcgcaat
tacgtgccggcgccgaactacgcccgggcgttcctggagcgggcggtgccgctgcaggag
ccgctgacgacgacgatggcgcgcgagctgaagcgcatggtcggcgtgcccttcgaggcg
gaggacttcgactggggccgggtccccgaccatctgcggatcaccttccggatcgtcgac
gagcggcgccgcaagctggcggaggacaaagacctccaggcgctgaagctgcggctgaag
ccgaaagcgcgcaaggcgctctcgcaggccgcggcggcgacggccgagcggcagggcggg
gagtccgtggagcgcgcggggctcacggactggacgatcggcacgctcagccgcgtcttc
gagacccggcgggccgggcagccggtgaaggcgtatccggccctcgtcgacgacggaccg
aaggcggacaccgtgtcggtgcggctcttcgacaccgaggccgagcagaccgaggcgatg
tggaagggcacgcggcggctgatcctgcgcaacatcccggtcaatccggcgaagttcgcc
tccgacaagctgacgaacgcgcagaagctcgcgctgtcggccaatccgcacggctcggtc
caggcgctcttcgaggactgcgccacggcggcggccgaccggctgatcgccgacttcggc
gggccggcctgggacgaggagtcgtaccgcaagctctacgacaaggtgcgggcggagatc
gtcgacacgaccgtacggacggtgggccaggtgcagcaggtgctggccgcctggcaggcc
tgtgagcggcgcctgaaggccgtacgcagccccgcgctgctgccgaacctggcggacgtg
cgggcgcagctcgacgccctcgtgcggcccggtttcgtgaccgaggcggggctgcggcgg
ctgccggacctgatgcggtacctgatcgcggcggaccggcggctgcagcagatgccgacg
aacgtccagcgggacacgacccgcatggagaaggtccacgagatgcgggacgagtacgcc
tggctgcgggagcagttgcccgccgggcgcccggtgccggcggcggtgacggagatccgg
tggatgatcgaggagctgcgggtcagctacttcgcgcacgccctggggacggcgtacccg
gtgtcggacaagcggatcgtgaaggcgatcgacgcggcggcaccgtga
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