Streptomyces griseoaurantiacus: V9K83_19635
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Entry
V9K83_19635 CDS
T10677
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgrs Streptomyces griseoaurantiacus
Pathway
sgrs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V9K83_19635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgrs03400
]
V9K83_19635 (mfd)
Enzymes [BR:
sgrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V9K83_19635 (mfd)
DNA repair and recombination proteins [BR:
sgrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V9K83_19635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WWY86247
LinkDB
All DBs
Position
4449917..4453447
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAVTAAADGNRMHVDLVGPPAARPFAVAALARGTGRPVLAVTA
TGREAEDLAAALRTLLPPQGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRADDP
ETGPVSVVVAPVRSVLQPQVKGLGDLVPVALRSGETADLGAVVAALSAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEEVRERAAALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRSADLVATSQEFLQASWAATAGGGEAPIDVDAASLWPLADVRDRARELDMM
WWSVSQFAADLELDADTLKLGMHAPESYRGDTAKALADTKGWLAEGWRTVFVTEGQGPAS
RTVEVLGGEGVAARLDVDLGEISPSVVHVACGCIDHGFVDPALKLAVLTETDLSGQKAAG
REGARMPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGGDTPWQRELEDAFPYAETPDQLTTIAEVKDDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVRALSRFQTDTEAKA
VLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKRFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAALDGGA
QEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATTEEDVAAVREELVDRYGKLP
EPVENLLLVAGLRMLARACGVGEVVLQGNNIRFAPVDLRESQELRVKRLYPGAVLKPATH
QVLIPRPKTAKIGGKPLVGRELLSWVGEFLTSVLDS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaggcggtc
accgccgccgcggacggcaaccgcatgcacgtcgacctcgtcggcccgcccgccgcgcgc
cccttcgccgtcgccgcgctcgcccgtggtaccggccgccccgtcctcgccgtcaccgcc
accggccgcgaggccgaggacctcgccgccgcgctgcgcaccctgctgccgccgcagggg
gtcgtggagtacccctcgtgggagaccctcccgcacgagcgcctgagcccccgcagcgac
accgtcggccgccgcctggccgtgctgcgccggctcgcccacccccgcgccgacgacccg
gagaccggcccggtctccgtcgtcgtcgcccccgtgcgttccgtgctgcaaccgcaggtc
aagggcctgggcgacctcgtccccgtggcgctgaggagcggtgagaccgccgacctgggc
gcggtcgtcgccgccctgtcggccgccgcgtacgcgcgcgtggagctggtggagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgaggagcacccg
ctgcgcgtggagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcgctccctggaggtggccgagcacggcctgtgggcgcccccgtgccgtgagctgctg
ctgaccgaggaggtgcgcgagcgggccgccgcgctggccgaggaccacccggagctgggc
gaactgctcggcaagatcgccgagggcatcgccgtggagggcatggagtccctcgcgccc
gtcctcgtcgacgacatggaactgctgctcgacgtgctgcccaagggcgcgatggccgtc
gtctgcgacccggaacgggtgcgcacccgctcggcggacctggtggcgacctcgcaggag
ttcctgcaggcctcctgggccgccaccgccggtggaggcgaggcgccgatcgacgtggac
gccgcctccctgtggccgctggccgacgtgcgggaccgggcgcgcgagctggacatgatg
tggtggtcggtctcccagttcgccgccgacctcgagctggacgccgacaccctcaagctc
ggcatgcacgcccccgagagctaccgcggcgacaccgcgaaggcgctcgccgacaccaag
ggctggctcgccgagggctggcgcacggtgttcgtcaccgagggccagggccccgcctcc
cgcaccgtcgaggtgctcggcggcgagggcgtcgcggcccggctcgacgtcgacctcggc
gagatctccccgtccgtggtgcacgtcgcctgcggctgcatcgaccacggcttcgtcgac
cccgcgctgaagctcgcggtgctcaccgagaccgacctgtccgggcagaaggcggccggc
cgcgagggcgcccggatgcccgcccgccgccgcaagacgatcgacccgctcaccctggag
acgggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcaccgtgcagggcgcgacccgcgagtacctggtcgtcgagtacgcccccgccaagcgc
ggccagccgggcgaccggctgtacatccccaccgaccagctcgaacagatcaccaagtac
gtcggcggcgaggcgcccaccctccaccggctcggcggcgccgactggacgaagaccaag
gcgcgggcgaagaaggcggtcaaggagatcgccgcggacctgatcaagctgtacagcgcg
cgcatggcggcgcccggacatgccttcggcggcgacacgccctggcagcgcgagctggag
gacgccttcccgtacgcggagacccccgaccagctcaccacgatcgccgaggtcaaggac
gacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcggctacggcaag
acggagatcgccgtccgcgccgcgttcaaggcggtccaggacggcaagcaggtcgccgtc
ctcgtgcccacgacgctgctggtgcagcagcacttcggcacgttctccgagcgctacgcc
cagttcccggtcaacgtcagggccctctcccgcttccagaccgacacggaggcgaaggcg
gtcctggaggggctgcgggagggctcggtggacgtcgtcatcggcacccaccgcctgttc
tcctccgagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgggccaatgtcgacgtgctgacgatg
tcggcgacgccgatccccaggaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccacgccgccggaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagaagcagatcggcgcggccgtacgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtggagtccatcgaccgcgcggcggcccggctgcgggagatcgtgccc
gaggcgcgcatcgccaccgcgcacgggcagatgtcggagcaggcgctggagcaggtggtc
gtcgacttctgggagaagcggttcgacgtcctcgtctcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctcatcgtggagcgcggcgacaacttcggcctcagc
cagctccaccagctccgcggccgcgtcggccggggccgcgagcgcgggtacgcctacttc
ctgtacccgccggagaagccgctcacggagaccgcgcacgagcggctcgccaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccggggc
gccggcaacctgctgggcggtgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggcggtcgctgactaccgggccgcgctggacggtggggcc
caggaggagccgccgctcgaggtcaagatcgagctgccggtcgacgcgcacgtcccgcac
gactacgcgcccggcgagcggctgcgcctccaggcataccgggcgatcgcctccgccacc
acggaggaggacgtcgcggccgtgcgcgaggagctggtggaccggtacggcaagctgccg
gagccggtcgagaacctgctgctggtcgcgggcctgcggatgctcgcccgcgcgtgcggg
gtcggcgaggtcgtgctgcagggcaacaacatccgcttcgcgccggtggacctgcgcgaa
tcgcaggaactgcgcgtcaagcgcctctacccgggtgccgtcctcaagccggccacccac
caggtgctgatcccccgcccgaagacggcgaagatcggcggcaagccgctggtgggccgc
gagttgctgtcctgggtcggcgagttcctgacgtcggtgctcgactcctag
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