Streptomyces griseochromogenes: AVL59_03730
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Entry
AVL59_03730 CDS
T04729
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sgs
Streptomyces griseochromogenes
Pathway
sgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL59_03730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgs03019
]
AVL59_03730
03400 DNA repair and recombination proteins [BR:
sgs03400
]
AVL59_03730
Enzymes [BR:
sgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVL59_03730
Messenger RNA biogenesis [BR:
sgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVL59_03730
DNA repair and recombination proteins [BR:
sgs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AVL59_03730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ANP48801
UniProt:
A0A1B1AQE6
LinkDB
All DBs
Position
791262..793265
Genome browser
AA seq
667 aa
AA seq
DB search
MRGTGVIKEMPEAAESEALATLHRVFGYEAFRGEQEAIVEHVVAGGDALVLMPTGGGKSL
CYQIPALVRPGTGIVISPLIALMQDQVDALRALGVRAGFVNSTQDFDERRVVEAEFLAGE
LDLLYLAPERLRLESTLDLLSRGKISVFAIDEAHCVSQWGHDFRPDYLALSLLGERWPDV
PRIALTATATRATHQEITQRLNLPTARHFEASFDRPNIQYRIVPKADPKKQLLAFLREEH
AGDAGIVYCLSRNSVERTAEFLSSNGIEAVPYHAGLDGGVRAAHQSRFLREEGLVVVATI
AFGMGIDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGLPSTAWMAYGLNDVIQQRKLIQS
GEGDEAFRRRAAAHLDAMLALCETARCRRGQLLAYFGQDPSAEGCGNCDTCVTPPETWDG
TVAAQKVLSTVVRLQRERGQKFGAVQIVDILLGKRTGKVIQFDHDQLSVFGIGQDLAEGE
WRGVVRQLLAQGLLAVEGEYGTLVLTEASGSVLRREREVPLRKEPAKPAASRSGSGASSG
RGDRKAKVAAAELSDELLPAFEALRAWRAEQAKEQGVPAYVIFHDATLREIVTRWPGSVR
ELGTISGVGEKKLATYGEGVLGVLSALDGASPAPETAPAGAAAPAPGESPEDDWPEPGDE
PEPDDWI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgggacgggcgtgatcaaggagatgccagaggcggccgagagcgaggcgctggcc
acactgcaccgggtcttcgggtacgaggccttccgcggcgaacaagaggcgatcgtcgag
catgtggtggcaggcggcgacgccctcgtcctcatgccgaccggtggcggcaagtcgctg
tgctaccagatcccggccctggtcagacccggtacgggcatcgtgatctcgccgttgatc
gcgctgatgcaggaccaggtggacgccctgcgggccctcggcgtgcgggccggcttcgtc
aactccacccaggacttcgacgagcggcgcgtggtcgaggccgagttcctcgcgggcgag
ctggacctgctgtacctggcgccggagcggctgcgcctggagtccacgctcgatctgctc
tcccgcggaaagatctccgtcttcgcgatcgacgaggcccattgtgtgtcccagtggggc
cacgacttccgccccgactacctggcactctccctgctcggtgagcgctggccggacgtc
ccgcggatcgccctcacggcgacggccacacgcgccacccaccaggagatcacccagcgg
ctgaacctgccgacggcccgccacttcgaggccagcttcgaccggcccaacatccagtac
cggatcgtacccaaggccgaccccaagaagcagctgctcgccttcctgcgggaggagcac
gcgggtgacgccggcatcgtgtactgcctctcccgcaactcggtggagcggacggccgag
ttcctgagcagcaacggcatcgaggcggtgccgtaccacgcgggcctggacgggggcgtg
cgagcggcccaccagtcccggttcctgcgcgaggagggcctggtcgtggtcgcgaccatc
gccttcggcatgggcatcgacaagccggacgtgcgcttcgtcgcccacctggacctgccc
aagtcgatcgagggctactaccaggagacgggccgcgcgggccgtgacggactgccctcc
accgcctggatggcgtatggcctcaacgacgtcatacagcagcgcaagctgatccagtcc
ggcgagggcgacgaggcgttccgccgcagggccgccgcccacctcgacgcgatgctcgcc
ctgtgcgagaccgcccggtgccggcgcggccagctgctggcctacttcggccaggacccc
tcggccgagggctgcggcaactgcgacacctgcgtcaccccgccggagacctgggacggc
accgtcgccgcgcagaaggtgctgtcgacggtggtacggctgcagcgggagcgcgggcag
aagttcggtgccgtgcagatcgtcgacatcctgctcggcaagcgcaccggcaaggtgatc
cagttcgaccacgaccagctgtccgtcttcggcatcggccaggacctcgccgagggcgag
tggcggggcgttgtccgccagctgctcgcccaggggctgctcgcggtcgagggggagtac
ggcacgctggtgctgaccgaggcgagcggttcggtgctgcggcgggagcgcgaggtgccg
ctgcgcaaggaaccggcgaagccggccgcctcccggtccggctcgggcgcttcctccggc
cgcggcgaccgcaaggccaaggtcgcggcggcggagctgtccgacgaactgctccccgcg
ttcgaggccctgcgcgcctggcgtgccgagcaggcgaaggaacagggcgtcccggcctac
gtcatcttccacgacgccaccctgcgcgagatcgtcacgcggtggccgggatcggtgcgg
gagctgggcacgatcagcggcgtcggcgagaagaagctcgcgacgtacggagaaggcgtg
ctcggtgtgctgtccgcactggacggtgcgagcccggctcccgagaccgccccggcgggt
gctgccgcgcccgcacccggcgagtccccggaggacgactggcccgagccgggggacgag
ccggagccggacgactggatatag
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