Streptomyces griseochromogenes: AVL59_10265
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Entry
AVL59_10265 CDS
T04729
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sgs
Streptomyces griseochromogenes
Pathway
sgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL59_10265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgs03019
]
AVL59_10265
03400 DNA repair and recombination proteins [BR:
sgs03400
]
AVL59_10265
Enzymes [BR:
sgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVL59_10265
Messenger RNA biogenesis [BR:
sgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVL59_10265
DNA repair and recombination proteins [BR:
sgs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AVL59_10265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
SWI2_SNF2
DUF8096
Motif
Other DBs
NCBI-ProteinID:
ANP49942
UniProt:
A0A1B1ATU4
LinkDB
All DBs
Position
complement(2377717..2379882)
Genome browser
AA seq
721 aa
AA seq
DB search
MEHTSNADLRAQADSVLARLVGDTTGEARLREDQWRAIEALVADRRRALVVQRTGWGKSA
VYFVATSLLRSRGSGPTVIVSPLLALMRNQVGAAARAGIHARTINSSNTEEWEAVQDQIA
AGEVDVLLVSPERLNNPDFRDQVLPKLSAATGLLVVDEAHCISDWGHDFRPDYRRLRTML
ADLPPGVPVLATTATANARVTADVAEQLGTGGTSDALVLRGPLDRESLSLGVLRLPDAAH
RMAWLADHLDDLPGSGIIYTLTVAAAEEVTAFLRQRGHTVASYTGKTENADRQQAEDDLL
ANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGKE
DEAIWEYFASLAFPSEDLVRRTLDVLARADRPLSLPALEPLVELRRSRLETMLKVLDVDG
AVHRVKGGWVATGQPWSYDAERYGWVARQRTAEQQAMRDYAAATDCRMEFLRRQLDDEGA
KPCGRCDNCAGPRFTADTSTAAVDAARVDLGRAGVEVEPRRMWPTGLPAIGIDLKGRIPA
GEQASPGRALGRLSDIGWGNRLRPLFALQAPDAPVPDDVARAVVDVLADWARGRGGWASG
AADAQPRPEGVVTVASRTRPMLIHSLGARIAEIGRLPLLGSVEYYGETPQVSRSNSAQRL
KALDGALTVPPALASALSEARGPVLLVDDFTETGWTLAVAARLLRRAGASGVLPLVLAVQ
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggagcacacgagcaacgcggacctgcgggcgcaggccgactccgtcctcgcccggctc
gtcggggacaccacgggcgaggcccggctgcgcgaggaccagtggcgggcgatcgaggcg
ctggtcgccgaccggcgccgggccctggtcgtgcagcgcaccgggtggggcaagtccgcg
gtgtacttcgtggcgacctcgctgctgcggtccagaggcagcggacccacggtgatcgtc
tccccgctgctcgcgctcatgcgcaaccaggtgggggccgcggcccgcgccggcatccac
gcccggaccatcaactcctccaacaccgaggagtgggaggcggtccaggaccagatcgcg
gccggcgaggtcgacgtgctgctagtcagtcctgagcggctgaacaaccccgacttccgc
gaccaggtcctgcccaaactctccgcggcgaccggtctgctcgtggtcgacgaggcgcac
tgcatctccgactggggccacgacttccgccccgactaccgtcggctgcgcaccatgctc
gccgacctcccgccgggtgtccccgtgctcgccaccacagccacggcgaacgcgcgcgtg
accgccgacgtcgcggaacagctcggtaccggcggcacctcggacgccctggtgctgcgc
ggaccgctggaccgggagagcctgagtctcggcgtgctgcggctgccggacgccgcgcac
cggatggcctggctcgccgaccacctcgacgacctgcccggctccggcatcatctacacc
ctcaccgtggctgcggccgaggaggtcaccgcgttcctccggcagcgcgggcacaccgtc
gcctcctacacgggcaagacggagaacgccgaccggcagcaggccgaggacgacctgctc
gccaaccgcgtcaaagcgctggtcgccacctccgcgctcggcatgggcttcgacaaaccg
gacctcggcttcgtcgtgcacctcggttcgccgtcctcccccatcgcctactaccagcag
gtcggccgcgccggccgtggcgtcgagcacgccgaggtgctgctgctgcctggcaaggag
gacgaggcgatctgggagtacttcgcctcgctcgcctttccctccgaagacctggtacgc
cggacccttgacgtcctcgcccgggccgaccggccgctctcgttgccggctctggagccc
ctggtggagctgcgccgctcccggctggagacgatgctgaaggtcctcgacgtggacgga
gcggtgcaccgcgtcaagggcggctgggtcgcgacggggcagccgtggtcgtacgacgcc
gagcggtacgggtgggtggcccggcaacgcacggccgagcagcaggcgatgcgcgactac
gcggccgccacggactgccggatggaattcctccggcgccagctggacgacgagggcgcc
aagccctgcggccgctgcgacaactgcgcggggccgcgcttcaccgccgacacctcgacg
gcggccgtggacgccgcccgcgtcgacctgggccgtgccggggtcgaggtggagccccgc
cgcatgtggccgaccggccttccggcgatcggcatcgacctcaagggacgtattccggcc
ggtgaacaggcctcccccgggcgggccttgggtcggctctcggacatcggctggggtaac
cggctgcgccccctgttcgcgctccaggcaccggacgcacccgtgccggacgacgtggcg
cgagccgtggtggacgtgctggccgactgggccaggggccggggcggctgggcctccggg
gcggccgacgcccagccccggcccgagggtgtggtcaccgtcgcctcgcgcaccaggccg
atgctgatccactccctgggggcccgcatcgccgagatcggccggctaccgctgctgggc
tcggtggagtactacggtgaaacgccgcaggtatcgcgcagcaacagcgcccagcgtctg
aaggccctcgacggtgcgctgacggtgccgcccgctctcgcctccgcactctccgaggct
cgcggtccggtcctgctggtcgacgacttcacggagaccggctggaccctcgcggtcgcg
gcgcgtctgctcagaagggccggggccagtggggtcctgcctctggtgctggccgtccag
ggctga
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