Streptomyces griseochromogenes: AVL59_32155
Help
Entry
AVL59_32155 CDS
T04729
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sgs
Streptomyces griseochromogenes
Pathway
sgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL59_32155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgs03019
]
AVL59_32155
03400 DNA repair and recombination proteins [BR:
sgs03400
]
AVL59_32155
Enzymes [BR:
sgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVL59_32155
Messenger RNA biogenesis [BR:
sgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVL59_32155
DNA repair and recombination proteins [BR:
sgs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AVL59_32155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ANP53579
UniProt:
A0A1B1B424
LinkDB
All DBs
Position
7470208..7472811
Genome browser
AA seq
867 aa
AA seq
DB search
MRDSWIGAQQLFDAWPFVVPTPSESEYGGTLRRLKDALDGLTEQRASWRDVAALTRQILL
EAQASGNTFGLSVPTGAPLPTRQQWEQVHCHALPDGRRVLVTARLWHPGGEDQKADEAAT
YDLEKVHLGESLQTHLELEPCPADPFWIRALGSDYAQYKSIGQRQAARAVALAEPGSTVI
ACLPTGHGKTALVQAPALLASNRTGVTLVVVPTVVLALDMERRAQELLTSRGRRSPSGRY
AYIGGLDENLKQQIREDIRAGKQRIVFTNPESLVSGLKSALEDAAEAGHLHYFVIDEAHL
VEQWGEGFRPEFQTMSVHRRTWLSAAPPGRAPVTVCMSATLTEQQVATLEKLFADPEPAE
IVWGAQVRHEPSYYIDAFTDEEQRTEAILRAIDRLPKPLALYVTERKDAKAWLDRLRTAG
FARVADVAGYSSPDERRSAVEGWSGRSASGPMPTRYDIVVGTSAFGLGVDLPDVRSVVHA
CLPETVDRYYQEVGRTGRDGRPSVAYLASAPRDEPVAEGINRQAIIGADKAWSRWRWMWT
LRDKTYPRQRHYLVNLDSIPDNVHDTSEANRDWNIRTLNLMLRAGLIGLHVPEPPQRYDD
EPRAAFQERLDRFYEVASTHVDVTLEDAQTNDEEHFRSRFEAERRRSITAQRQALADLRT
LLRGDRCTGEVLSTYYRVQQGGAPLLTGVNCRGCPSCRTTGLPQENGFYKLAGDPHPLVP
APSRTSHDPLRSMRGTASCLSLWWGTETDRQVKVPRLLEMLALRGMNVIGGPGITPSLAE
ALQEDVAPRPIICDTDADLLRFYEGPIVWVLDDDPSPMDRVLRSRLDSPDVTYLIHPRST
PDPSRPGLAFGALHAQSYSVQTALESF
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgacagttggattggggcacagcaactctttgacgcctggccgttcgttgtcccg
acgccgtcggagtcggaatacggcggcacattgcgacggctcaaggatgccctcgacggc
ctgactgaacagagggcctcgtggcgtgacgtggcagcactgacacggcagatccttctc
gaagctcaggccagcggaaacacctttggcctttcagttccaactggagcaccgctgccc
acgcgacaacagtgggaacaggtgcactgccatgcgctcccggacggccgtcgtgtcttg
gtcacagcccgactgtggcaccctggcggggaagatcagaaagctgacgaagcagccacg
tacgacttggagaaggtccacctcggggagagcctccaaacacaccttgagttggagccg
tgtccggctgaccctttttggatccgcgctctcggcagcgattacgcccagtacaagtca
atcgggcagcggcaagctgcgcgcgctgtggcactcgcagagcctggcagcactgtcatc
gcttgtttgccgaccggccacggcaagaccgccctcgtacaggctccggctctactcgca
agtaaccgtaccggtgtcacgttggtcgtggtgccgactgtcgtgctcgcgttggacatg
gaacgtcgcgcccaggagttgctgaccagccgcggacgacgaagtccctccggtcgctac
gcttacatcggcggccttgacgagaacctcaagcaacaaatacgagaagatatccgggca
ggtaaacagcggatagtctttacaaaccctgaatctctcgtttccggacttaaatctgca
ctggaagatgctgccgaggcaggtcaccttcattacttcgtcattgacgaggcccacctc
gtcgagcaatggggcgaagggttccgacctgagttccaaaccatgtctgtccaccgtcga
acctggctgagcgcagcaccacccggacgtgcacccgtgacggtctgcatgagcgccaca
ctcaccgagcagcaagtagccacgctcgagaaactcttcgcagaccccgagccggccgag
atcgtttggggcgcccaggtgcgccatgaaccgagctactacattgatgccttcaccgac
gaggagcagcgcaccgaggcaatccttcgtgccatcgaccgtctaccgaaaccactagct
ctgtacgtgacagagcggaaagacgccaaggcgtggctcgaccgcctgcgcacagccggc
ttcgcacgagtagctgatgtcgctggctattccagccccgacgaacgccgaagcgcagtg
gaaggctggagcggccggtccgcttcgggccctatgcctacccgatacgacatcgtcgta
ggaacttcagccttcggcctgggcgtagacctacccgacgtccgcagtgtggtgcacgcc
tgcctgcccgaaaccgtcgaccgctactaccaggaggtagggcgcacaggccgggacgga
cgtccgtcggtggcctacctggcctccgcccccagggacgagcccgtcgccgagggcatc
aatcggcaagcaatcatcggtgcagacaaagcgtggtcgaggtggcggtggatgtggacg
ctcagggacaagacatacccacgtcagcgtcactacctcgtcaacctcgactccatcccg
gacaacgtccacgacacctcggaggcaaaccgcgactggaacatccgcaccttgaacctc
atgttgcgcgccgggctcatcggtctccacgttcctgagccgccccagcgatacgacgac
gaaccacgcgcagccttccaggaacgcctcgaccggttctacgaggtggcatccacgcat
gtggacgtaacactcgaagacgctcagaccaacgacgaggagcacttccggagtcggttc
gaagcggagcgccggcgctcaatcaccgcgcagcgacaggccctagccgatctccgcacc
ctgctacgcggcgatcgatgcacgggcgaggttctcagcacctactaccgggtccagcaa
ggcggtgccccgctgctgacgggggtgaattgccgaggctgccccagttgcagaacgaca
ggccttccgcaggagaacggcttctacaagctggccggagaccctcatccactggttcca
gctcctagtcggaccagccacgatccactccgaagcatgcgtggcaccgcgtcctgcctc
agtttgtggtgggggaccgagacggaccgccaggtcaaggtgcctcggctgctggagatg
ctggcccttcgtggcatgaatgtgattggtgggccagggatcaccccatctctagccgaa
gctcttcaggaggatgtggcaccgcggccgatcatctgcgacaccgacgcggatctgctc
cgcttctacgaaggccccattgtgtgggttctggacgatgatccgtcaccgatggaccgg
gtgctcaggtcgcggcttgactcaccagatgtgacctacttgatccacccgcgaagtacg
ccggatccaagtcgcccaggcctggccttcggtgctcttcatgctcaaagttactccgtt
cagaccgcgttggagtcgttctga
DBGET
integrated database retrieval system
