Streptomyces griseochromogenes: AVL59_36900
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Entry
AVL59_36900 CDS
T04729
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sgs
Streptomyces griseochromogenes
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgs03019
]
AVL59_36900
Enzymes [BR:
sgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AVL59_36900
Messenger RNA biogenesis [BR:
sgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AVL59_36900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
AAA_25
AAA_30
nSTAND3
Helicase_RecD
HA2_N
AAA_11
AAA
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ANP54423
UniProt:
A0A1B1B6J6
LinkDB
All DBs
Position
8503410..8505998
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AA seq
862 aa
AA seq
DB search
MIRYDALDALPVRAALPALTDALDAHGTAVLVAPPGTGKTTLVPLVLAGLVGGGPARRVV
VAEPRRIAARAAARRMAWLLGEKTGGSVGYTVRGERVAGRHTRVEVVTTGVLLQRLQRDQ
ELAGVDVVVLDECHERHLDADTVAAFLWDVRQALRPELRLVAASATTDAGGWARLLGDAP
VVEAEGVSHPVDVLWAPPARPVRPPHGMWVDPALLAHVASVVRRALAEREGDVLCFLPGT
GEIARVAGQLGGLGAVDVLQVHGQAPAAVQDAVLAPGERRRVVLATSVAESSLTVPGVRV
VVDSGLAREPRVDHARGLSGLTTVRASRAAGRQRAGRAGREAPGAVYRCWTEAEDGRLTA
FPAPEIKVADLTAFALQAACWGDPDASGLALLDPPPGGAMAAARDVLSAVGAVDSDGRAT
ERGVRLARLGVHPRLGRALLDTSGEGAEVVALLSEEVPREYGDDLAGALRRARRGGDAYA
GRWVAEVRRLRAVSGEFAHPLTRDRRPEGTAQAGPDTPAGAGDRRPRGGAGAGGWGGAGE
DGLVGLVAALGFPERVAKSDGGSYLMASGTRAEVAEGSALRGAPWIVVAVADRPAGKGHA
RVRLGAAVSEEVARAAAGALLTERDEVHWADGDVVARRVERLGAVELAVRPLRDAGPALV
RAALLDGLRQDGLGLLRWSPEAQTLRQRLAFLRAHLGEPWPDVSDEALHARVDEWLEPEL
SRARRRADLGRIDAGQALARLLPWASGEAARLDELAPERIAVPSGSRIRIDYRDPERPVL
AVKLQEMFGLRETPAVAGVPLLVHLLSPAGRPAAVTADLASFWKDGYKGVRAELRGRYPK
HPWPEDPATAEPTRHTNARLRR
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgccctggacgcgctgcccgtgcgcgccgccctgcccgccctcacc
gacgccctggacgcgcacggcaccgccgtcctggtggcgccgcccggcaccggcaagacg
acgctggtcccactggtgctcgcgggcctggtcggcggcggtcccgcgcggcgggtcgtg
gtggccgagccgcggcggatcgcggcgcgcgcggccgcccggcggatggcgtggctgctg
ggcgagaagaccggcgggagcgtcggctacacggtgcgcggcgaacgggtcgcggggcgg
cacacgcgcgtggaggtcgtgaccaccggtgtgctgctgcagcggctgcagcgggaccag
gagctcgcgggcgtcgacgtcgtggtgctcgacgagtgtcacgagcggcatctggacgcc
gacacggtggccgcgttcctgtgggacgtacggcaggcgctgaggccggagctgcggctg
gtggccgcgtcggcgaccacggacgcggggggctgggcgcggctgctcggcgatgctccg
gtggtcgaggccgagggggtctcgcaccccgtggacgtgctgtgggcgccgcccgcgcgt
ccggtacggccgccgcacggcatgtgggtggatccggcgctgctggcacacgtggcgtcg
gtggtgcggcgggcgctggccgagcgggagggcgacgtactgtgcttcctgcccggcacg
ggcgagatcgcgcgcgtggccgggcagctcggcggtctgggggcggtggacgtgctccag
gtgcacgggcaggcgccggccgccgtgcaggacgcggtgctggcgcccggggagcggcgc
cgggtggtgctggccacgtccgtggcggagtcttcgctgacggtgcccggggtgcgggtg
gtggtcgactcggggctggcgcgggagccgcgggtggatcatgcgcgcggcctgagcggg
ctgaccacggtacgggcgtcccgcgcggccgggcggcagcgggcggggcgggccgggcgt
gaggcgccgggcgcggtgtaccggtgctggacggaggccgaggacggccgtctgacggcc
tttcccgcgccggagatcaaggtggccgatctgaccgcgttcgcccttcaggcggcctgc
tggggcgatcccgacgcctcggggctggcgctgctggatccgccaccgggcggggcgatg
gcggcggcgcgggatgtcctgtcggccgtgggggcggtggactccgacgggcgggccacc
gagcgaggagtgcggctggctcggctgggggtgcatccgcggctggggcgggcgctgctg
gacacgtcgggcgagggggccgaggttgtcgctctgctctcggaggaggtgccgcgggag
tacggggacgatctcgccggtgcgttgcggagggctcggcgtggtggcgacgcctatgcg
gggcgatgggtcgcggaggtgcggcggctgcgggccgtctcgggggagttcgcccacccg
ctcacccgtgaccgccgcccagaaggcaccgcccaggccggaccggacaccccggcggga
gcaggagaccgtcggccgcgagggggcgccggggccggcgggtggggcggggccggggag
gacgggctcgtcgggctcgtcgccgctcttggttttcccgagcgggtcgccaagtcggac
ggggggtcgtatctcatggcctcggggacgcgggccgaggtggccgaggggtcggctctg
cgcggagcgccctggatcgtcgtcgccgtcgccgaccggcccgccgggaaggggcacgcg
cgcgtgcggctcggggcagccgtgtccgaggaggtggcccgggccgcggccggagcgctg
ctgacggagcgggacgaggtgcactgggccgacggggacgtcgtggcccggcgcgtcgag
cggctgggagccgtcgagctggccgtgcggcctctgagggacgccggaccggccctcgta
cgcgcggcgctcctcgacgggctacggcaggacgggctcgggctgttgcgctggtcaccg
gaggcgcagacgctgcggcagcggctggcgttcctgcgcgcgcacctcggggagccgtgg
ccggacgtgtcggacgaggcgctgcacgcgcgcgtggacgaatggctggaacctgagctg
agccgggcccggcggcgggccgatctcgggcggatcgacgccgggcaggcgctggcgcgg
ctgctgccctgggcgagcggggaggccgcccgccttgacgagctggcgcccgagcggatc
gccgtaccgagcgggtccaggatccggatcgactatcgggaccccgagcggcccgtgctc
gcggtgaagctgcaggagatgttcgggctgcgggagacaccggccgtcgcgggggtgccg
ctgctcgtgcacctcctctcccccgccggacggcccgccgccgtcaccgccgacctcgcc
tccttctggaaggacggctacaagggcgtgcgcgcggagttgcgggggcgctatccgaaa
catccgtggccggaggacccggcgacggccgagcccacccggcacaccaacgcgcggctc
aggcgctga
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