Streptomyces griseochromogenes: AVL59_40295
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Entry
AVL59_40295 CDS
T04729
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgs
Streptomyces griseochromogenes
Pathway
sgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL59_40295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgs03019
]
AVL59_40295
03009 Ribosome biogenesis [BR:
sgs03009
]
AVL59_40295
Enzymes [BR:
sgs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AVL59_40295
Messenger RNA biogenesis [BR:
sgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AVL59_40295
Ribosome biogenesis [BR:
sgs03009
]
Prokaryotic type
rRNA processing factors
AVL59_40295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ANP57090
UniProt:
A0A1B1BE34
LinkDB
All DBs
Position
complement(9263112..9267245)
Genome browser
AA seq
1377 aa
AA seq
DB search
MPAIPAAEADDIIEAEEKAEAETVAEQPAAVEEPAPAGRPRRRASRRASAPVGSPASAEA
VETVVPVATAEAAESAEPAEAVASAQAVEEPASAGRPRRRASRRASSPAGSPAPAETAVP
AAVSETAAEAEAEKKAETETVPAEAAATGRPRRRATRRASAPAGAPTAAETPEPAPAVEA
PAAPAVDIAPAAEAPADEVPAEEAAPRRARRRATRRVSAPTGAAETETETEAAETEQVPA
AEAPVAEVPAEEAAPRRARRRATRRVSAPTGAAVAEETAAEAAQSAEETEIAEPVVTAQA
AETPAAEAPQAPVAEAPAEGAAPRRRRRVVRQAAAGFSAPAHSPAAAPAEAAEAEAPRRP
ARPTVAVFQAPVFAEPKFQTPERAAAEAAAEAAEAEEPEESAEERAEAGARGRRRRRRGA
AEETQTVEATEAEEPAEAEEPEESAEDLSETEADEAEAEEAEGTEGAESYEESGSRRRRR
RGGRRRRRGDAAEGEGVDAEADELAAEQAAQDAEDTAEQDEEDAEDARGDESGGSSSSRR
RRRRRRRAGDSGTDAEPSADDPERTVVKVREPRKPAEPSDEVQSIKGSTRLEAKKQRRRE
GREQGRRRVPIITEAEFLARREAVERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQSTSY
VGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSV
LVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPE
DAGVIVRTAAEGASEEELRRDVERLQAQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIF
NEDFSKVVVSGDEAWETIHGYVSHVAPDLAERLSKWTSEVDAFATYRIDEQLAKALDRKV
WLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGI
IVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSE
TCVHCNGRGVIVHMEQPTAAGGGGGKRKKRGRGGDGHVHEHEAAAVAAETGEAVEPEVET
VAEVVAEVAEPVALPAPDFAADEELYSSIAEAEAAATRGRTRRRASRRASAPAGAPKAES
RKAASQKAAQVAETVEEPSAQAGTAAEEAALPVRPVTAAEPVAVEEPAAAPQAAAEEAVA
EEAAPKGRTRRRATRKVSAPAGSPAVAEAAVVTVVEAAPAVEAPAERPEPAATAPAEEAP
AESAAPARPRRRAVRKATAPTASEEAAVVVVPATAAEAPVAGSAADEAVEEAVPAKKTAR
KAAKKATAKKAATKKTAAKKTAAKKTTAKKAAKTAKTAAAKTVAKKTTTVSAATDEG
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
gtgccggccataccggccgcggaggccgacgacatcatcgaagcggaggagaaggccgag
gccgagaccgtggccgagcagcccgccgccgtcgaggagcccgcgcccgccggccgtccg
cgtcgccgggccagccgccgtgcctccgcgcccgtcgggtcgcccgcgtccgcggaggcc
gtggagacggtcgtaccggttgccacggccgaggccgccgaatccgctgagcccgccgag
gccgtcgcgtccgctcaggccgtcgaggagcccgcgtctgccggccgtccccgtcgccgg
gccagccgccgtgcctcctcgcccgccggatctccggcgccggcggagaccgcggtgccc
gccgccgtgtccgagaccgccgccgaggccgaggccgagaagaaggccgagacggagacc
gtgccggccgaggccgcggccaccggccgtccgcgccgccgcgccacccgacgcgcctcc
gcccccgccggtgcgccgacggcagccgagacgcccgagcccgctcccgccgtggaggct
ccggccgctcccgcggtggacatcgcccccgctgccgaggcgcccgccgacgaggttccc
gccgaggaggcggctccgcgtcgtgcccgtcgtcgtgccacccgtcgggtgtccgcgccg
accggcgctgccgagaccgagaccgagaccgaggccgccgagaccgagcaggtccccgcc
gccgaggcgcctgttgccgaggttcccgccgaggaggcggctccgcgtcgtgcccgtcgt
cgtgccacccgtcgggtgtccgcgccgaccggtgccgccgtggccgaggagaccgccgcc
gaggccgcccagtccgccgaggagaccgagatcgccgagcccgttgtgaccgcgcaggcc
gctgagacccccgccgccgaagcgccgcaggcccccgtcgcggaggcccccgccgagggt
gcggccccgcgccgtcgacgtcgtgtcgtgcggcaggccgcggccggattctccgcgccc
gcgcattccccggccgccgcgccggccgaggccgcggaggccgaggcgccgcgtcgcccg
gccaggcccaccgtggccgtcttccaggcgccggtgttcgccgagccgaagttccagacc
ccggagcgggccgccgccgaggccgccgccgaggccgccgaggcggaggagcccgaggag
tccgcggaggagcgcgccgaggccggcgcgcgtggccgccgccgtcgccgccggggcgcc
gccgaggagacgcagaccgtggaggccaccgaggccgaggagccggcggaggcggaggag
cccgaggagtccgccgaggacctcagcgagaccgaggccgacgaggctgaggccgaggag
gcggagggcaccgagggcgcggagagctacgaggagtccggttcgcgccgccgtcgccgc
cggggcggtcgtcgccgtcgccgcggtgacgccgcggagggcgagggtgtcgacgccgag
gcggacgaactggccgccgagcaggccgcgcaggacgccgaggacaccgccgagcaggat
gaagaggacgccgaggacgctcgtggcgacgagtccggcggttccagctccagccgccgc
cgtcgccgtcgtcgtcgccgggccggtgacagcggcaccgacgccgagccgtccgccgac
gacccggagcgcacggtcgtcaaggtccgcgagccccgcaagcccgccgagccctccgac
gaggtgcagtccatcaagggctcgacccgcctcgaggcgaagaagcagcgccgccgggag
ggccgtgagcagggccgccgacgtgtcccgatcatcaccgaggccgagttcctggcccgc
cgcgaggccgtcgagcgtgtgatggtcgtgcgccagcacggcgaccgcacccagatcggc
gtcctggaggacggcgtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtac
gtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtcgatggaggccgccttc
atcgacatcggcaagggccgcaacgccgtcctgtacgccggtgaggtcaacttcgaggcg
ctgggcatggccaacggcccgcgccgcatcgaatccgccctgaagtccggccagtcggtc
ctcgtccaggtgacgaaggacccgatcggtcacaagggcgcccgcctgaccagccaggtc
tccctcccgggccgctacctcgtgtacgtccccgagggctcgatgaccggcatcagccgc
aagctgcccgacaccgagcgcgcccggctgaagaccatcctcaagaagatcgtccccgag
gacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggaggagctgcgccgg
gacgtcgagcggctgcaggcgcagtgggaggacatccagaagaaggccaagagcggcaac
gccccgacgctgctgtacggcgagccggacatgaccgtccgggtcgtgcgtgacatcttc
aacgaggacttctccaaggtcgtcgtcagcggtgacgaggcctgggagacgatccacggg
tacgtctcgcacgtggccccggacctggccgagcggctgtcgaagtggacctccgaggtc
gacgccttcgccacctaccggatcgacgagcagctcgccaaggcgctggaccgcaaggtc
tggctgcccagcggcggttcgctggtgatcgaccggaccgaggcgatggtcgtcgtcgac
gtcaacaccggcaagttcaccggccagggcggcaacctggaggagacggtcaccaggaac
aacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatc
atcgtgatcgacttcatcgacatggtcctggagtccaaccgcgacctggtgctgcgccgt
ctgctggagtgcctgggccgtgaccgcacgaagcaccaggtggccgaggtgacctcgctg
ggcctggtgcagatgacccgcaagcgggtcggccagggcctgctggagtccttctccgag
acctgcgtgcactgcaacggccgtggcgtcatcgtgcacatggagcagccgaccgccgcc
ggcggtggcggcggcaagcgcaagaagcgcgggcgcggtggtgacggccatgtgcacgag
cacgaggccgccgccgtggccgcggagaccggcgaggccgtcgagccggaggtggagacc
gtcgccgaggtggtcgccgaggtggccgagcccgtcgccctccccgcccccgacttcgcg
gcggacgaggagctgtacagcagcatcgccgaggcggaggcggcggccacccgtggccgt
acgcgtcgccgcgcgagccgccgggcctcggctccggccggtgcgccgaaggccgagagc
cgcaaggccgcgagccagaaggccgcgcaggtcgccgagaccgtcgaggagccgtcggcg
caggccggcacggccgccgaggaggccgcgcttcccgtgcggccggtgacggccgccgag
ccggtcgccgtcgaggagccggcggcggccccgcaggccgcggccgaggaggccgtcgcc
gaggaggccgcgcccaagggccgtacgcgccgtcgtgcgacccggaaggtgtcggcaccg
gccggttccccggcggtcgccgaggcggccgtggtgacggtcgtcgaggccgccccggcg
gtcgaggcaccggccgagcggcccgagcccgcggctacggctccggccgaggaggcgccc
gccgagagcgcggccccggcccgcccgcgccgtcgtgccgtgcgcaaggccaccgcgccg
accgcgtccgaggaagcggccgtcgtggtggtgccggccaccgccgccgaggcacccgtg
gccgggtccgccgccgacgaggcggtggaggaggccgtgccggccaagaagaccgcccgc
aaggcggccaagaaggccacggcgaagaaggcggccaccaagaagaccgccgccaagaag
acggcagccaagaagacgacggccaagaaggcggcgaagaccgccaagacggccgccgcc
aagacggtggcgaagaagaccactacggtctccgccgccaccgacgagggctga
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