Streptococcus gallolyticus subsp. gallolyticus ATCC 43143: SGGB_0007
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Entry
SGGB_0007 CDS
T02018
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgt
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
Pathway
sgt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SGGB_0007 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgt03400
]
SGGB_0007 (mfd)
Enzymes [BR:
sgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SGGB_0007 (mfd)
DNA repair and recombination proteins [BR:
sgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SGGB_0007 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Saccharop_dh_N
adh_short
Motif
Other DBs
NCBI-ProteinID:
BAK26906
LinkDB
All DBs
Position
5962..9474
Genome browser
AA seq
1170 aa
AA seq
DB search
MGKSMNIIDLFSQNKLIQTWHSGVANLGRQLIMGLSGSSRALAIASAYQANEEKIVVITS
TQNEVEKLASDLSSLIGEDKVYTFFADDVAAAEFIFASMDKAHSRLEALNFLQDNKQSGI
LITSLVGARVLLPNPEIYAESQLNFVVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFSRR
GDIVDIYEMTADYPYRLEFFGDEVDGIRQFDAETQKSLSNIEQVTIFPADELILSEEDFA
RASKAFETFLETAKDEQQQAYLSELYAATQEQYKHQDIRRFLSLFYAKEWTLLDYIPKGT
PVFFDDFQKLVDRNAKFDLEVANLLTEDLQRGKAVSSLVYFADIYKDLRQYQPATFFSNF
HKGLGNLKFDKLHNFTQYPMQEFFNQFPLLIDEVNRYQKSKATVLIQADSQHGLERLQEN
LHEYGLELPVVAADDLQAQQAQLVVGNLSNGFYFADEKIVLITEHEIYHKKIKRRIRRSN
ISNAERLKDYNELSKGDYVVHHVHGIGKFLGIETIEIHGVHRDYLTIQYQGSSTISLPVE
QIESLSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFAFS
PDDDLQREFDEDFAFVETEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFK
AVKDHKQVAVLVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQV
DIIIGTHRLLSKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLH
MSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREIDRGGQVFYVYNRVDTIDQ
KVSELQELVPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNTLF
IENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSGFK
IAMRDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAIAKKQGKFQARRKSNAEMNLQI
DAYLPSEYIDDERQKIEIYKRIREIESQKDYQSLQDELIDRFGEYPDQVAYLLEIGLVKA
YMDNAFTELVERKDNNLLVRFEKASLQHYLTQDYFEALSKTNLKARIGENQGKIEITFNI
RDKKDYEILEELQNFGKMLAEIKSRKIEKD
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtctatgaatattattgatttatttagccaaaataagctcattcaaacatgg
catagcggcgtggctaatcttggtaggcaactgattatgggcttatcaggttctagtaga
gctcttgccattgcttctgcttatcaggctaatgaggaaaaaatagttgtcatcacctca
acacaaaatgaagttgaaaaattggctagtgatttatctagcttgattggtgaggacaag
gtttatactttttttgcggatgatgttgcggcggcagagtttatttttgcctcgatggat
aaggcacactcacgcctagaagctttaaattttttacaagataataagcaatctggtatc
ttaattacaagtttagtgggagcacgtgttttactaccaaatcccgaaatttatgctgaa
agtcagctaaattttgttgtcggtgaggattacaaccttgacaaggttgtaaaggtactg
tcaaatgtcggttaccaaaaagtatcacaggttcttaatccaggcgaatttagtcggcgt
ggtgatatcgttgatatttatgagatgacagctgactatccttatcgtttagagttcttt
ggtgatgaagttgatggcattcgtcagtttgatgcagaaacacaaaaatcacttagtaat
attgagcaggtaaccattttcccagctgatgagctcattttatcggaagaagattttgct
agagctagtaaggcatttgagacgtttttagagactgctaaagatgaacaacagcaagct
tatttaagtgagctttatgctgcaactcaggaacagtataagcatcaagacattagacgt
ttcttatcactcttttatgcaaaagagtggacgttacttgattacattcctaagggaacc
ccagtcttttttgatgattttcaaaagctagttgaccgcaatgctaagtttgatttggaa
gttgcaaacttattgacagaagatttacaacgtggtaaagcagtgtcaagcttggtttac
tttgctgatatttataaagacttacgtcaatatcagccagcaacgttcttttctaatttt
cataaaggattgggtaatcttaaatttgataaacttcataattttacacaatatccaatg
caagaatttttcaatcaatttccgttattgattgatgaagttaatcgttatcaaaaatct
aaagcgaccgttttaattcaagcagattcgcagcatggcttagaacgtttacaggagaat
ttacatgaatatggtttggaattacctgtggttgctgcagatgatttacaagcacaacaa
gctcagctagttgttggaaatttatcaaatggcttttattttgctgatgagaaaattgtt
ctcattaccgagcatgaaatttatcataagaaaattaagcgccgtattcgtcgttcaaat
attagcaatgccgaacgtttgaaagactacaatgaattgtcaaaaggtgattatgtggtt
caccatgttcatggtattggtaaatttttaggaattgaaacaattgaaatccatggtgtg
caccgcgattatttgaccattcaatatcaaggttcttcaacaatttcattgccagtagag
caaattgaaagtttatcaaaatacgtttctgcagatggcaaggaacctaaaatcaataaa
ttaaatgatggtcgtttccaaaagaccaaacaaaaggtttctaagcaagttgaagacatt
gcggatgatttgttgaaattgtatgcggaacgtagtcagctaaaaggatttgctttttca
ccagacgatgatttgcagcgggaatttgacgaagattttgcttttgtagaaacagaggac
cagcttcgctctatcaaggaaattaagcacgacatggaagaagataagccaatggatcgc
ttattggttggggatgttggctttggtaaaacagaagttgcgatgcgcgccgcttttaaa
gctgttaaagaccataaacaagtagctgtcttagtgccaacaactgttcttgctcaacaa
cactacacaaatttctcagagcgttttgaaaattatcctgttacagttgatgtgcttagt
cgttttcgtagcaaaaaagaacaaaatgacaccctagacaagttgaaaaaaggtcaagtt
gatattattattggtactcatcgtctgctatctaaagatgttgattttgctgatttaggt
ttgattattattgatgaggagcaacgttttggcgttaagcacaaagaaaaattaaaagag
cttaagactaaagttgatgtattgaccttgacagcgactccaattccacgaacccttcac
atgtcaatgttgggaattcgcgacctgtcagttattgaaacgccaccgactaaccgttac
cctgttcaaacttacgttttggaaactaatcctggtctgattcgtgaggctatcattcgt
gaaattgaccgtggcggacaagttttctacgtttacaatagggttgacactattgaccaa
aaagtgtcagaattgcaagagttggttcctgaagcaagcattggttttgttcatggtcag
atgagtgaaattcaacttgaaaatacgctcatggactttattgacggtgtttacgatgtt
ctggttgcgacaactatcattgaaacaggcgttgatatttctaatgttaatactttattt
atcgaaaatgcagaccacatgggcttgtcaactttgtatcaacttcgtggacgtgttggg
cgttctaatcgaattgcttacgcctacctcatgtaccgcccagacaagattttgacagag
gtctctgaaaaacgtttagatgctattaaaggctttacagaattaggttctggtttcaaa
attgccatgcgtgatttatccattcgtggtgcaggaaatattcttggcgcctcacaaagt
ggttttattgactctgttggttttgaaatgtattcacagttactagaagaggctatcgct
aagaaacaaggcaaatttcaagcgcgccgtaagagcaatgcggagatgaatttacaaatc
gatgcttatttaccaagcgaatatattgacgatgaacgtcaaaaaattgaaatttataaa
cgtattcgtgaaattgaaagccagaaagattatcaaagtttacaagatgagttaattgac
cgttttggcgagtaccctgaccaagtcgcctacttacttgaaattggcttggttaaagct
tatatggacaatgctttcacagaacttgtggaacgtaaagataacaatctattagtacgt
tttgaaaaagcttcgctgcaacattacttgacacaagattattttgaagctctttcaaaa
acaaacttgaaagcccgtattggcgaaaatcaaggtaaaattgaaattacttttaatatc
cgtgataaaaaagattatgagattttagaagaacttcagaatttcggtaaaatgctagct
gaaatcaaatccagaaaaattgaaaaggactag
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integrated database retrieval system
