Streptococcus gallolyticus subsp. gallolyticus ATCC 43143: SGGB_0444
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Entry
SGGB_0444 CDS
T02018
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
sgt
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
Brite
KEGG Orthology (KO) [BR:
sgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgt03019
]
SGGB_0444
03009 Ribosome biogenesis [BR:
sgt03009
]
SGGB_0444
Enzymes [BR:
sgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SGGB_0444
Messenger RNA biogenesis [BR:
sgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SGGB_0444
Ribosome biogenesis [BR:
sgt03009
]
Prokaryotic type
rRNA helicases
SGGB_0444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SWI2_SNF2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
BAK27337
LinkDB
All DBs
Position
456773..458116
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AA seq
447 aa
AA seq
DB search
MSFNDFNFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIF
EKLDENSNNVQVVITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEKLKS
SQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKDVQI
LVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGRDKNAQILEITKAL
NPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGGIPPRERKRTMNQIKKLSYEYIVATD
LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDIRELEKL
GIKFVPKMLKNGEFQDTYDRDRRANREKSYQKLDTEMIGLVKKKKKKIKPGYKKKIQWKV
DEKRKRERRAANRAKGRAERKARKQTF
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttaacgattttaattttaagccctacattcgtgaggcgcttgcagagcttaaa
ttcacaaatccgacagaagtacaacaaaagttaattcccgttgtgcgttctggtcgtgat
ttggttggagaatctaaaactggttcaggaaaaacgcacactttcttgttgccgattttt
gaaaaattagatgaaaacagcaataatgttcaggtggttatcacagcaccaagccgtgag
ttggcaacgcaaatttatcaagcaaccaaacaaattgctgaaaaatctgaaacagaaatt
cgtgtggcaaactacgttggtggtacagataaactacgtcaaattgaaaaattgaaatca
tctcagccacacatcgtcattggtacacctggtcgtatctatgatttggtcaaatcaggt
gatttggaaatttataaagctcatacctttgttgttgatgaagctgatatgacgcttgat
atgggattccttgatacggtggataagattgcagggacattgccaaaagatgttcaaatt
ttggttttctcagcgactattccacaaaaattgcaacccttcttgaaaaaatatttgaca
aatccagtcatggaaaaaatcaagacaactactgttatcgcagacacaattgataattgg
ttggtttcaactaagggacgtgataaaaatgcgcaaatcttggaaatcactaaagcttta
aatccatatcttgccatgatttttgtaaacacaaaagaacgtgcagatgagttgcatagc
taccttgtgtcaaatggattgaaagtggcaaaaatccacggcggtattccaccacgtgaa
cgtaaacgcaccatgaaccaaatcaaaaaactgtcatacgaatacattgtggcgacagat
ttggcagcgcgtgggattgatattgaaggagttagtcatgttatcaatgatgctattccg
caagatttatcattctttgtgcaccgtgttggacgtacaggacgtaatggtttaaatggt
attgcgattacgctttacaaaccaagtgacgattctgatattcgtgaacttgaaaaattg
ggcattaaatttgtccctaaaatgcttaaaaacggtgaatttcaagatacttacgaccgt
gaccgtcgagctaaccgcgaaaaatcttaccaaaaattagatactgaaatgattggtttg
gttaaaaagaaaaagaaaaaaatcaaaccaggctacaagaaaaaaattcaatggaaagtt
gatgaaaaacgcaaacgtgaacgccgtgctgctaatcgtgccaaaggacgtgctgaacgt
aaagcaagaaaacaaactttctag
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