Streptococcus gallolyticus subsp. gallolyticus ATCC 43143: SGGB_1378
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Entry
SGGB_1378 CDS
T02018
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
sgt
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
Pathway
sgt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sgt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SGGB_1378 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgt03021
]
SGGB_1378 (rpoD)
Transcription machinery [BR:
sgt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SGGB_1378 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DprA_WH
DUF6494
DUF2316
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
BAK28238
LinkDB
All DBs
Position
complement(1421818..1422927)
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AA seq
369 aa
AA seq
DB search
MAKEKEITTFNVQVAEFIRNHKKNGTAVDDEVTEKLVIPFSLDADQIDDLLERLTDGGIS
ITDKEGNPSTKYVVEEPKPEELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTSEEEKEL
AVAVAAGDLQAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKG
FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQL
DEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRS
KQLRDFIED
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagaaaaagaaattacaacctttaatgttcaagttgcagaatttattcgtaat
cataaaaagaacggcactgccgttgatgatgaagtaactgaaaaattagttattccattt
tcattagatgccgatcaaatagatgaccttttggaacgtttgacagatggtggtatttca
attacggacaaagaaggaaatccatcaacaaaatatgtcgttgaagaaccaaaaccagaa
gaattgacagacgaagaattacttggtagtaattctgccaaggttaatgacccagtgcgt
atgtacctcaaagagattggtgtcgtgccattgctcactagcgaggaagaaaaagaattg
gctgttgccgttgctgctggtgaccttcaagcaaaacaacgtttggctgaagctaacttg
cgtttggttgtttcaattgcaaaacgttatgttggacgtggtatgcaatttcttgacctt
attcaagaaggaaacatgggcttgatgaaagctgttgataaatttgactactcaaaaggg
ttcaaattctcaacttatgcgacatggtggattcgtcaagctatcacacgtgctattgct
gaccaagctcgtacgattcgtattcctgttcacatggttgaaactattaataaacttgtt
cgtgaacaacgtaacctccttcaagaacttggacaagacccaacgcctgaacaaattgca
gagcgtatggatatgacgcctgacaaagttcgtgaaattttgaaaatcgctcaagaacct
gtttcgttggaaacaccaatcggtgaagaagatgacagtcaccttggtgatttcattgaa
gatgaagttattgaaaacccagtagattacacaactcgtgtcgtacttcgtgaacaattg
gacgaagttttggatacgttgacagaccgtgaagaaaatgtgttacgtttgcgttttggt
cttgatgatggtaaaatgcgtacattagaagatgttggtaaagttttcaatgtgacgcgt
gaacgtattcgtcaaattgaagccaaagctcttcgtaaactacgccacccaagccgtagt
aaacaactccgtgattttatcgaagattaa
DBGET
integrated database retrieval system
