Streptococcus gallolyticus subsp. gallolyticus ATCC 43143: SGGB_1638
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Entry
SGGB_1638 CDS
T02018
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sgt
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
Pathway
sgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGGB_1638 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgt03019
]
SGGB_1638 (rnr)
03016 Transfer RNA biogenesis [BR:
sgt03016
]
SGGB_1638 (rnr)
Enzymes [BR:
sgt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SGGB_1638 (rnr)
Messenger RNA biogenesis [BR:
sgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SGGB_1638 (rnr)
Transfer RNA biogenesis [BR:
sgt03016
]
Prokaryotic type
tRNA degradation factors
SGGB_1638 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
RNase_II_C_S1
HTH_DeoR
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BAK28496
LinkDB
All DBs
Position
complement(1704263..1706596)
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AA seq
777 aa
AA seq
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MNEKIIAYLEEHGKVNINELAAGLDMAGAEKFPKLIKEISKLESQGKLRFDDHGNLALRK
KIEKKKEITVTGVFRANKAGFGFLAVDENEDDMFVGRNDVGHAVDGDTVEAVVKKPANRL
KGTAAEVRIVGIVERSLKTVVGKFILDDEKPKYAGYIKSKNQKIQQKIYIKKEPVLLDGT
EIIKVDIDKYPTRGHDYFVGHVRDIVGHQGDVGIDVLEVLESMDIKSEFPEDVMAEANAV
PDAPSEKDMIGRVDLRNEITFTIDGADAKDLDDAVHIKLLNNGNFELGVHIADVSYYVTE
GSALNREAVARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSCLMEIDRNGHVVNH
QICQSVIKTTFRMTYSDVNDIITGDEELIEQYQPIVDSIHHMTALHNILETMRVRRGALN
FDTSEAKIIVNDKGMPVDIVLRQRGIAERMIESFMLAANETVAEHFAKRKLPFIYRIHEE
PKAEKLQKFLDYASIFGVQIHGTANKITQQALQDFMAKVEGKPGAEVLNMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIREYTQLTDEKIEHFRNVIPELATSS
STLERRAIDAERVVEAMKKAEYMEEYVGQEFDGVVASVVKFGMFIELPNTIEGLVHITTL
PEFYNYNERTLTLQGEKSGKVFRVGQTIKIKLTRADKETGDIDFEYIPSEYDVVEKVKKS
RKDRSGKEKRRPKADKHKGSKSSKPRNRKSSALTSKKSGKKPFYKEVAKKKSRKAKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaaattattgcttatttagaggagcatggaaaagtcaatattaatgaattg
gctgctgggctagacatggctggcgctgaaaaatttccaaagcttatcaaagagatttca
aaattggaaagtcaaggaaaactgcgttttgatgaccatgggaaccttgctcttcgtaaa
aaaatagagaagaaaaaagaaatcaccgttacgggtgtttttcgtgctaacaaagctggt
tttggttttttagcggttgacgaaaatgaagatgacatgtttgtcggacgtaatgatgtt
ggtcatgcggttgacggagatacggttgaagcagttgttaaaaagccagctaatcgcttg
aaaggtacagcagctgaggttcgcattgtcggcattgttgagcgtagcttaaaaacagtt
gttgggaaatttattcttgatgacgaaaaaccaaaatacgctggttacattaaatccaaa
aatcagaaaattcaacaaaagatttatatcaagaaggagcctgtcctgcttgacggcact
gagattatcaaggttgacattgataaatacccaacacgtggtcatgattattttgttggt
catgtgcgtgacatcgttggacaccaaggtgatgttggtattgatgtgcttgaagtcctt
gaatcaatggacatcaaatcagaattcccagaagatgttatggctgaagccaatgcggtt
ccagatgcgccgtctgaaaaagacatgattgggcgtgttgatttgcgtaatgaaatcacc
tttaccattgatggtgcggatgccaaagacttggatgacgctgtccatattaaattgctc
aacaatggtaattttgagctcggtgttcatattgcggacgtttcatactatgttacagaa
ggctctgcgcttaatcgtgaagccgttgctcgtgggacatcagtttatgtgactgaccgt
gtagttccaatgctgcctgaacgtttgtcaaatggtatttgttcgttaaatcctaatgtt
gaccgtttgacacaatcatgtttaatggaaattgaccgcaatggtcacgttgttaatcac
caaatttgtcaatcagtcattaagacaactttccgtatgacttacagcgatgtcaatgac
attattactggtgatgaagaattgattgagcaataccaaccaatcgttgactctattcat
catatgactgctcttcacaatattcttgaaaccatgcgcgtgcgccgcggtgctcttaac
tttgatacgagcgaagccaagattattgttaatgataaaggaatgccagttgatattgtg
cttcgtcaacgcggtattgctgaacgcatgattgagtctttcatgttggcagctaatgaa
acagttgcagagcattttgcaaaacgtaaattgccatttatttaccgtatccatgaagaa
ccaaaagctgaaaaattacaaaaattccttgattatgctagcatttttggcgttcaaatc
catggtacagctaataaaatcactcaacaagctttgcaagatttcatggcaaaagtggaa
ggtaaaccaggcgcagaagtgttaaacatgatgcttcttcgttcaatgcaacaagcacgt
tattctgaacataatcacggacactatggtttggctgcagagtactatactcacttcaca
agtccaattcgtcgttatcctgatttgcttgttcaccgcatgattcgcgaatacacacaa
ctcactgatgagaaaatcgaacactttagaaatgtgattccagaattggcaacgtcatct
tcaacccttgaacgtcgtgctattgatgctgaacgtgttgttgaagccatgaaaaaagcc
gaatacatggaagaatacgttggtcaggaatttgacggtgtggttgctagtgtcgtgaaa
tttgggatgttcatcgaattgccaaatacaatcgaaggacttgttcacatcacaactctg
ccagaattttacaattacaacgaacgtacattgacccttcaaggtgaaaaatcaggaaaa
gttttccgtgttggtcaaacgattaaaatcaaattaacacgtgctgataaagaaactggc
gatattgactttgaatacattccaagtgagtatgatgtggtagagaaagttaaaaaatca
cgcaaagaccgttctggtaaagaaaaacgtcgtccaaaagcggataaacacaaaggttca
aaatcaagcaaaccacgaaatcgtaaatcttccgctttaacttctaaaaagtcaggcaag
aaacctttctacaaagaagttgctaagaaaaaatcacgtaaagctaaaaaataa
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