Streptomyces glaucescens: SGLAU_16235
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Entry
SGLAU_16235 CDS
T03327
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sgu
Streptomyces glaucescens
Brite
KEGG Orthology (KO) [BR:
sgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgu03019
]
SGLAU_16235 (hrpA)
Enzymes [BR:
sgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SGLAU_16235 (hrpA)
Messenger RNA biogenesis [BR:
sgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SGLAU_16235 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_16
T2SSE
AAA_30
SLFN-g3_helicase
NACHT
ResIII
TsaE
PhoH
Motif
Other DBs
NCBI-ProteinID:
AIR99221
UniProt:
A0A089XBD2
LinkDB
All DBs
Position
3705832..3709776
Genome browser
AA seq
1314 aa
AA seq
DB search
MSTHPAPALGALAPRLTELSLRDAHRLGRRLEGARKIRKPEARAAVLAEIEAEVSKAEER
MAGRRSRVPAITYPEQLPVSQKKAEIAAAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEELDTPLGEAVGWKVRFTDQVNPDATFIKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPQRPDLKVVITSATIDPERFSR
HFGDAPIIEVSGRTYPVEVRYRPLLEEDSEDADRDQITAITDAVEELMAEGKGDILVFLS
GEREIRDTADALTKKQYRFTEILPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEEDFL
ARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPA
QKDPRKRLTETGRKLAQLPVDPRLARMVLEADRNGCAREVMVIAAALSIQDPRERPADKQ
TQADQQHARFKDETSDFLAYLNLWRYIREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGIHLNEDDAPADRVHVSLLAGLLSHIGMKDVKDGNKNEYLGARNAKFAIF
PGSALFRKQPRFVMSAELVETSRLWARVNARIEPEWVEPLAGHLVKRTYSEPHWEKDQAA
VMAYEKVTLYGVPIVAQRKVNYGRIDPETSRELFIRNALVEGDWRTHHKFFADNRRLLSE
VEELEHRARRRDIVVDDETLFDFYDQRVPEHVVSGAHFDSWWKRKRHEQPDFLDFEREML
IRESAEAVTKADYPDTWRQGQLKFRVTYQFEPGADADGVTVHIPLQVLNQVTGEGFDWQI
PGLREELVTELIRSLPKPIRRNYVPAPNYAKAFLERAVPLQEPLTVTMARELKRMVGVPF
EADDFDWAKVPDHLRVTFRIVDERRRKLAEDKDLEALKLRLKPKARKALSQAAAATAVRQ
GGESLERKGLTDWTIGTLTRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEPEQAEAMW
KGTRRLILRNIPVNPAKFASDKLTNAQKLALSANPHGSVQALFDDCATAAADKLIADFGG
PVWDEESYRKLYDKVRAEIVDTTVRTVAQVQQVLAAWQACERRLKAVRSPALLPNLQDVR
RQLDALVKPGFVTESGLRRLPDLMRYLVAADRRLQQMPTNVQRDTTRMEKVHEMQDEYAW
LLEQLPQGRPVPSSVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcaccccgcccccgccctcggcgctctcgccccccgcctgaccgagctgtcc
ctgcgcgacgcgcaccggctcgggcgcaggctcgaaggcgcacgcaagatccgcaagccg
gaggcccgggccgccgtcctcgccgagatcgaggcggaggtctccaaggccgaggaacgg
atggccgggcgccgctcccgcgtgcccgcgatcacgtaccccgagcagctgccggtcagc
cagaagaaggccgagatcgcggcggccatccgcgatcaccaggtcgtgatcgtggccggt
gagaccggctccggcaagaccacccagatcccgaagatctgcctggagctgggccgcggc
gtgcgggggatgatcgggcacacccagccccgccggatcgccgcccgcacggtcgcggag
cgcgtcgccgaggagctggacacgccgctcggcgaggccgtcggctggaaggtgcgcttc
accgaccaggtgaacccggacgccaccttcatcaagctgatgacggacggcatcctgctg
gcggagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcg
cacgagcggtccctcaacatcgacttcctgctcgggtacctcgcgcagctgctgccccag
cgccccgacctcaaggtcgtcatcacctccgcgaccatcgacccggagcgtttctcccgg
cacttcggcgacgccccgatcatcgaggtcagcggccggacctacccggtggaggtgcgc
taccgcccgctgctggaggaggactccgaggacgccgaccgcgaccagatcaccgcgatc
acggacgcggtcgaggagctgatggccgagggcaagggagacatcctcgtcttcctctcc
ggcgagcgggagatccgcgacacggcggacgcgctgacgaagaagcagtaccggttcacc
gagatcctgccgctgtacgcccggctctcgcacgccgagcagcaccgcgtcttccagccg
cacacgggccgccggatcgtcctggccaccaacgtggccgagacgtccctgaccgtcccg
ggcatcaagtacgtcatcgaccccggcttcgcccgcatctcgcgctacagccaccgcacc
aaggtccagcggctgcccatcgagccggtctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtccgacggcatctgcatccggctgtacagcgaggaggacttcctc
gcccgcccggagttcaccgacgcggagatcctgcgcaccaacctggcctccgtcatcctc
cagatgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagctcctccaggagctgggcgcgctcgacccggcg
cagaaggacccgcgcaagcggctcaccgagaccggccgcaagctggcccagctgcccgtc
gacccgcgcctggcccgcatggtcctggaggccgaccgcaacggctgcgcccgcgaggtc
atggtgatcgcggcggcactgtccatccaggacccgcgcgagcgtccggccgacaagcag
acccaggccgaccagcagcacgcccgcttcaaggacgagaccagcgacttcctcgcgtac
ctcaacctgtggcggtacatccgcgagcagcagaaggagcgcggctcgtcgtccttccgc
cggatgtgcaagcaggagtacctgaacttcctgcgcatccgcgaatggcaggacatctac
acccagctgcgcacggtcgccaagcagatgggcatccacctcaacgaggacgacgcgccc
gcggaccgcgtccacgtctccctcctcgccggcctcctctcccacatcgggatgaaggac
gtgaaggacggcaacaagaacgagtacctgggcgcgcggaacgccaagttcgcgatcttc
cccggatcggcgctgttcaggaagcagccccgcttcgtgatgtcggcggaactggtggag
acctcgcgcctgtgggcccgcgtcaacgccaggatcgagcccgagtgggtcgaaccgctc
gccggccacctcgtcaagcgcacctactccgagccgcactgggagaaggaccaggcggcg
gtgatggcgtacgagaaggtcacgctgtacggcgtcccgatcgtggcccagcggaaggtg
aactacggccggatcgacccggagaccagccgcgagctgttcatccgcaacgccctggtc
gagggtgactggcgcacccaccacaagttcttcgcggacaaccgcaggctgctcagcgag
gtcgaggaactggagcaccgcgcccggcgccgggacatcgtcgtcgacgacgagacgctg
ttcgacttctacgaccagcgcgtgcccgaacacgtcgtctccggcgcgcacttcgactcc
tggtggaagcgcaagcggcacgagcagcccgacttcctggacttcgaacgggagatgctg
atccgggagtcggcggaggcggtcaccaaggccgactaccccgacacctggcggcagggg
cagctcaagttccgcgtcacctaccagttcgaaccgggcgcggacgcggacggcgtcacc
gtgcacatcccgctccaggtgctcaaccaggtcaccggcgagggcttcgactggcagatc
ccgggtctgcgggaggagctggtcacggagctgatccgctccctgcccaagccgatccgc
cgcaactacgtgcccgcgccgaactacgccaaggcgttcctggagcgggcggtccccctc
caggaaccgctgaccgtgacgatggcccgcgagctgaagcgcatggtcggagtccccttc
gaggcggacgacttcgactgggcgaaggtccccgaccacctccgcgtcaccttccggatc
gtcgacgagcggcgccgcaagctggccgaggacaaggacctggaggcgctgaagctccgg
ctgaagccgaaggcgcgcaaggccctctcccaggccgcggcggcgaccgccgtacggcag
ggcggggagtccctggagcgcaagggcctgaccgactggacgatcggcacgctcacccgc
gtcttcgagacccgccgggccggccagccggtcaaggcgtacccggcgctggtcgacgac
ggtgacacggtctcggtccggctcttcgacacggagcccgagcaggcggaggccatgtgg
aagggcacccgccgcctgatcctccgcaacatcccggtgaacccggcgaagttcgcctcc
gacaagctgacgaacgcccagaagctcgccctctccgcgaatccgcacggctccgtccag
gcgctgttcgacgactgcgcgacggccgcggccgacaagctgatcgcggacttcggcggg
cccgtgtgggacgaggagtcgtaccggaagctgtacgacaaggtccgcgcggagatcgtc
gacacgacggtacgcacggtcgcccaggtgcagcaggtgctggccgcgtggcaggcctgc
gagcgccgcctgaaggccgtgcgcagccccgcgctgctgccgaacctccaggacgtgcgc
aggcagctggacgcgctggtgaagccgggcttcgtgacggagagcgggctgcggcggctg
ccggacctgatgcgctacctggtcgccgccgaccggcgcctgcagcagatgccgacgaac
gtccagcgggacaccacccgcatggagaaggtccacgagatgcaggacgagtacgcctgg
ctgctggagcagctgccgcagggccggccggtcccgtcgtcggtcctggacatccgctgg
atgatcgaggagctgcgggtgagctacttcgcccacgcgctgggcacggcgtaccccgtc
tccgacaagcggatcgtgaaggcgatcgacgcggcggctccgtga
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