Streptomyces glaucescens: SGLAU_19240
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Entry
SGLAU_19240 CDS
T03327
Symbol
rtcB2
Name
(GenBank) RNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgu
Streptomyces glaucescens
Brite
KEGG Orthology (KO) [BR:
sgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgu03016
]
SGLAU_19240 (rtcB2)
Enzymes [BR:
sgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SGLAU_19240 (rtcB2)
Transfer RNA biogenesis [BR:
sgu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SGLAU_19240 (rtcB2)
Prokaryotic type
tRNA splicing ligases
SGLAU_19240 (rtcB2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AIR99805
UniProt:
A0A089Z1U6
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All DBs
Position
4390687..4391880
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AA seq
397 aa
AA seq
DB search
MSYVEMPGAKVPIRMWADPATVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVDPA
RLHGFGTAGWDDFWGRFDGIAEAVKFRQERAGKQMGTLGSGNHFVEVCLDSTGSLWLMLH
SGSRNIGKELAEHHIDIARKLPHNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYARYNR
SIMMALLKDVIRKEFKKAKPVFEQEISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRRMSRNAAKRRFTAKDLEEQTRGVECRKDSG
VVDEIPAAYKPIEQVIDQQRDLVQVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggaaatgccgggcgcgaaggtgccgatccggatgtgggccgaccccgcg
acggtcgaggagggcgccctccagcaactgcgcaacgtcgcgaccctgccgtggatcaag
ggactggcggtcatgccggacgtccactacggcaagggcgcgaccgtcggctccgtcatc
gccatgcggggcgcggtgtgcccggcggcggtcggggtcgacatcgggtgcgggatgtcg
gcggtcaggacgtcactgaccgccaacgacctgcccggcgacctgtcgcgcctgcggtcg
aagatcgagcaggcgatcccggtgggccggggcatgcacgacgacccggtcgacccggcc
cggctgcacgggttcggcaccgcgggctgggacgatttctggggacggttcgacggcatc
gcggaggcggtgaagttccgccaggagcgcgcgggcaagcagatggggacgctcgggtcg
ggcaaccactttgttgaggtatgtctggattcgaccggttcgctctggctcatgctgcac
tccggctcccgcaacatcggcaaggaactcgccgagcaccacatcgacatcgcccggaaa
ctcccgcacaaccagggcctggtcgaccgcgacctcgccgtcttcatcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaggtacaaccgc
tcgatcatgatggcgctcctgaaggacgtgatccgcaaggagttcaagaaggccaagccg
gtcttcgagcaggagatcagctgccaccacaactacgtggcggaggagcggtacgacggc
atggacctgctcgtcacccgcaagggcgcgatccgggccgggtccggggactacgggatc
atcccgggctccatgggcacgggctcgtacatcgtgaagggcctcggcaacgagaagtcc
ttcaactccgcgtcccacggggccggccggcgcatgagccgcaacgcggccaagcgccgg
ttcaccgcgaaggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggt
gtcgtggacgagatcccggccgcctacaagccgatcgagcaggtcatcgaccagcagcgg
gacctcgtccaggtcgtcgcgaagctcaagcaggtcgtctgcgtgaagggctag
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