Streptomyces glaucescens: SGLAU_20040
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Entry
SGLAU_20040 CDS
T03327
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgu
Streptomyces glaucescens
Pathway
sgu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SGLAU_20040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgu03021
]
SGLAU_20040 (rpoC)
03400 DNA repair and recombination proteins [BR:
sgu03400
]
SGLAU_20040 (rpoC)
Enzymes [BR:
sgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SGLAU_20040 (rpoC)
Transcription machinery [BR:
sgu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SGLAU_20040 (rpoC)
DNA repair and recombination proteins [BR:
sgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SGLAU_20040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TarH
Motif
Other DBs
NCBI-ProteinID:
AIR99961
UniProt:
A0A089XDJ0
LinkDB
All DBs
Position
4560845..4564744
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQQIEQRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLYFLTTDAEGRGIKGE
GRAFASVAEAIMAFDAGELSLQAPVDIRFPVGTIPPRGWEPPVREEGEPEWQQGDSFTLR
TTLGRALFNELLPEDYPFVDYEVGKKQLSQIVNDLAERYPKVIVAATLDNLKAAGFYWAT
RSGVTVAISDVVVPEAKKEIVKGYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNDNFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLRLAIAERG
ADGSLVKAEDVETSVYARCLAEDIVVDGKVLAPAGTDLGDVLIDELITHGVAEVKTRSVL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVITPDDGSDETAYPISKRARL
LVSEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSRFEQENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccggatcggcctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgccccc
gtcacgcacatctggtacttcaagggcgttccgtcgcggctgggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccgcacccgcgacctgccctcgctggaggcccacgtctccgtcgagcgccag
cagatcgagcagcgccgcgacgccgacctcgaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggc
gccgagcgtgagatgaagcagctgcgcgaccgcgcgcagcgcgagatcgaccgcctcgac
gaggtgtggaaccggttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgaggaggaggccgagaagctccgcgagatc
atccgtaccggcaagggccagaagaagacccgcgcgctcaagcgcctgaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctggactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcg
ctcttcgacaacggccgtcgtggccgcccggtgacgggccccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgccagaacctgctcggcaag
cgcgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
accgtcgtgtacgacgtgctcgaagaggtcatcgcggagcacccggtcctgctgaaccgt
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgtccggtgacgatgccgacccaggac
atggtcctcggtctgtacttcctcaccacggacgccgagggccgcgggatcaagggcgag
ggccgcgcgttcgcgtccgtcgccgaggcgatcatggccttcgacgccggtgagctgtcg
ctccaggcgccggtcgacatccgcttcccggtgggcaccatcccgccgcgtggctgggag
ccgccggtgcgcgaggagggcgagccggagtggcagcagggtgacagcttcaccctgcgc
accacgctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tacgaggtcggcaagaagcagctctcccagatcgtcaacgacctggccgagcgctacccg
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttctactgggccacc
cgttccggtgtcaccgtggccatctccgacgtcgtcgtccccgaggcgaagaaggagatc
gtcaagggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaatgaggtc
gccgaggcgatgaacgacaacttcccgaagaccaacccgatcttcatgatggtgaactcg
ggcgcccgagggaacatgatgcagatgcgtcagatcgccggtatgcgcggtctggtgtcc
aacgccaagaacgagaccatcccgcgtcccatcaaggcgtcgttccgtgagggtctgtcc
gtgctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctcacccgtcgtctggtcgacgtctcccaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggtctgcgcctggcgatcgccgagcgcggc
gccgacggttcgctggtcaaggccgaggacgtcgagacctccgtgtacgcgcgctgcctc
gccgaggacatcgtcgtggacggcaaggtgctggccccggccggtaccgacctgggtgac
gtgctcatcgacgagctgatcacgcacggcgtcgccgaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgcgccatgtgctacggccgttcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggtgtcgccccg
atctccgaggccgccggccgcgtgcggatcgaggagaccgagaagaccaagaagatcgtc
atcacgccggacgacggcagcgacgagacggcgtacccgatctcgaagcgtgcccggctc
ctggtcagcgagggcgagcacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctgggccagcgcgccgtccaggtccacctggtcggcgag
gtccagaaggtgtacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctccgccgcgtgacgatcatcgagtccggcgacgccgagctgctgccc
ggcgagctggtcgagcgctcccgcttcgagcaggagaaccgtcgtgtggtccaggagggc
ggtcacccggcctccggtcgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gaatcctggctgtcggccgcctccttccaggagacgacccgagtcctgacggacgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgctaccgcaacatccgggtcgagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
accggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
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