Streptomyces gilvosporeus: B1H19_19585
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Entry
B1H19_19585 CDS
T05165
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgv
Streptomyces gilvosporeus
Brite
KEGG Orthology (KO) [BR:
sgv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgv03016
]
B1H19_19585
Enzymes [BR:
sgv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B1H19_19585
Transfer RNA biogenesis [BR:
sgv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B1H19_19585
Prokaryotic type
tRNA splicing ligases
B1H19_19585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ARF56097
UniProt:
A0A1V0TT45
LinkDB
All DBs
Position
complement(4417622..4418815)
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AA seq
397 aa
AA seq
DB search
MSYTEVPGAQVPIRMWTDPAAVEGVAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDSPVDPG
RLHGLATSGWEDFWARFDGVADAVRFRRERAVKQMGSLGGGNHFWEFCLDADDSVWIMLH
SGSRNIGKELAEYHMGVAQKLPQNQGLVDRDLAVFISDTPQMAAYRNDLFWAQEYAKHNR
EIMMALSQDVIRREFKKARVTFGEVISCHHNYVAEEQYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNPASFNSASHGAGRKMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VIDEIPGAYKPIEKVMEQQRDLVEVVAHLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaccgaagtgcccggtgcgcaggtaccgatccgcatgtggacggacccggcc
gcggtcgagggcgtcgcgatgcagcagctgcgcaatgtcgcgaccctcccgtggatcaag
gggctcgccgtgatgccggatgtgcattacggcaagggggccaccgtcggatcggtgatc
gcgatgcgcggtgccgtctgcccggcggcggtcggcgtcgacatcggctgcggaatgagc
gccgtcaagacctcgctcaccgccaacgacctccccggcgatctctcccggctgcgctcc
aagatcgagcaggcgattccggtggggcggggcatgcacgactccccggtcgacccggga
cggctgcacggactggcgacgtcgggctgggaggacttctgggcgcggttcgacggagtg
gccgacgcggtcaggttccggcgcgaacgggccgtgaagcagatgggctcgctcggcggc
ggcaaccacttctgggagttctgcctcgacgccgacgactccgtgtggatcatgctgcac
tccggatcgcgcaacatcggcaaggaactggccgaataccacatgggcgtggcgcagaag
ctgccgcagaaccagggactggtcgaccgcgatctcgccgtcttcatctccgacaccccg
cagatggcggcgtaccgcaacgatctgttctgggcgcaggagtacgccaagcacaaccgc
gagatcatgatggcgctctcccaggacgtcatccgccgggagttcaagaaggccagagtc
accttcggcgaggtcatctcctgccaccacaactatgtggccgaggagcagtacgacggc
atggacctgctggtgacccgtaagggcgccatccgggcgggcagcggcgagtacggcatc
attccgggttcgatgggcaccggctcgtacatcgtcaagggcctggggaatccggccagc
ttcaactcggcctcgcacggcgccggccgcaagatgagccgtaacgccgccaagaagcgc
ttttccacgcgggacctggaggagcagacgcggggcgtggagtgccgtaaggactccggg
gtgatcgacgagatcccgggcgcctacaagccgatcgagaaggtcatggagcagcagcgg
gacctggtggaggtcgtcgcgcacctcaagcaggtggtgtgtgtgaagggctga
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