Streptomyces gardneri: H4W23_14030
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Entry
H4W23_14030 CDS
T07252
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgx
Streptomyces gardneri
Pathway
sgx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4W23_14030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgx03019
]
H4W23_14030
03009 Ribosome biogenesis [BR:
sgx03009
]
H4W23_14030
Enzymes [BR:
sgx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H4W23_14030
Messenger RNA biogenesis [BR:
sgx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H4W23_14030
Ribosome biogenesis [BR:
sgx03009
]
Prokaryotic type
rRNA processing factors
H4W23_14030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QPK45637
LinkDB
All DBs
Position
complement(3100070..3103903)
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AA seq
1277 aa
AA seq
DB search
MLESNEDTNAPGDKLPPRRRRRAASRPAGPPVTEGTQATENTAPAETPAVEAAPVEAEAA
PAPRTRRRATRKATAPAVETIEVGAPLAEVPAAETATAAAPADEAAEAAPARPARRRATR
KATSPVTSTAAVEEPAVEGAPVAETAAAPVEEAAEAAPARPARRRATRKATSPVTSTAAV
EEPAVEVAPVAETAAAPVEEAPEAAAPAPRTRRRATRRVTSPEAAPEAPTEAATGESLPQ
DTVAQIAADEAEVAAAETAATRGRGRRRATSPQFTSEPVTKPETSRARRAERPAVAVFQA
PVFSEPMFQTPETAAMAAAEVVEPEELEEDELDETVEAEAAETTGPIEIPEATERAEAGS
RRRRRRRGEPVAVEPVPATVADEPEVEAAADELEEADEAEDTDEYGDRPSRRRRRGGRRR
RRGELTEVEESDESDELRAEDEGEAEEGEEEQDEAEAYAGGSSSSRRRRRRRRRSGDASA
DVEGTDEEGVRTVVKVREPRPAREKAEAGTSADEVQSIKGSTRLEAKKQRRREGREQGRR
RVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLG
KVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGMANGPRRIETALKSGQSVLVQVTKD
PIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVR
TAAEGASEDELRRDVERLQAQWEDIQKKAKQISTSAPSLLYGEPDMTVRVVRDIFNEDFS
KVIVSGDEAWETIHGYVSHVAPDLADRLSKWTSEVDVFATYRIDEQLMKALDRKVWLPSG
GSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDF
IDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHC
NGRGVIVHMEQPAVTGGGGKRAKKRGRGGAEHVHEHEHETVESGAEHETETEAEVAAELA
APVALPEPIAADEELYGSIAEAEAAASRGRGRRRATRRVSAPAAPARVVETETYVVEPEP
APVVEVVEPVAEPVVEAVVEETAAPAPRARRRATRRATSPVVSTTEAVEPAVVEPVAPVA
EEAPVAAPEPEPVVETAPEPVVEEAPVAAPPRARRRVVRKATAPAGSPAGAEEAAVLVVA
TTPAETEAATAEPEAEAETEAAPAKKTAARKTAKKATAKKAATKKTAATKKTAAKKTTAK
KAPAKKAAEKTAAPAQD
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagtccaacgaagacaccaacgcccccggtgacaagctgccgccgcgccgtcgg
cgccgcgccgcttcccgccccgccggtccgccggtgacggagggcacccaggccaccgag
aacacggcgcccgccgagaccccggccgtcgaggccgcgccggtcgaggccgaggccgcc
cccgcgccgcgcacccgccgccgcgccacccgcaaggccaccgcaccggccgtcgagacc
atcgaggtcggcgcccccctcgcggaggtccccgccgccgagacggccaccgccgccgcc
ccggccgacgaggccgccgaggccgctccggcgcgcccggcccgtcgccgtgccacccgt
aaggccacgtcgccggtgacgtccacggccgccgtggaggagcccgcggtcgagggcgcg
ccggtcgccgagaccgccgccgccccggtcgaggaggccgccgaggccgctccggcgcgc
ccggcccgccgtcgtgccacccgtaaggccacgtcgccggtgacgtccacggccgccgtg
gaggagcccgcggtcgaggtcgcgccggtcgccgagaccgccgccgccccggtcgaggag
gcccccgaggccgccgcgcccgccccgcgcacccgccgccgcgccacccgcagggtcacc
tcgcccgaggccgcccccgaggcgcccaccgaggccgccaccggcgagtccctgccgcag
gacaccgtcgcgcagatcgccgccgacgaggccgaggtcgccgccgccgagaccgccgcc
acccgtggccgcggccgtcgccgcgccacctcgccgcagttcacctccgagcccgtcacg
aagccggagacgtcccgcgcccgtcgcgccgagcgtcccgccgtcgccgtcttccaggcc
ccggtgttctccgagccgatgttccagaccccggagacggccgccatggcggccgccgag
gtcgtggagccggaggagctggaggaggacgagctcgacgagaccgtcgaggccgaggcc
gccgagacgaccggtcccatcgagatccccgaggccaccgagcgcgccgaggccggctcc
cgccgtcgccgtcgccgccgtggcgagcccgtcgccgtcgagcccgtcccggccaccgtc
gccgacgagcccgaggtcgaggccgccgcggacgagctcgaagaggccgacgaggccgag
gacaccgacgagtacggggaccgcccgtcccgccgtcgccgccgtggcggccgtcgccgt
cgccgcggtgagctcaccgaggtcgaggagtcggacgagtccgacgagctccgcgccgag
gacgagggcgaggccgaggagggcgaggaggagcaggacgaggccgaggcgtacgccggc
ggctccagcagctcccgtcgccgtcgccgccgtcgccgtcgcagcggggacgcctccgcc
gacgtcgagggcaccgacgaggaaggcgtccgcacggtcgtcaaggtccgcgagccccgc
ccggcccgcgagaaggccgaggccggcacgagcgccgacgaggtccagtccatcaagggc
tcgacccgcctggaggccaagaagcagcggcgccgcgagggccgcgagcagggccgccgc
cgcgtcccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtcgagcgcgtc
atggtcgtccgccagagcggcgagcgcacccagatcggcgtcctggaagacaacgtgctc
gtcgagcactacgtcaacaaggagcaggccacctcgtacgtcggcaacgtctacctgggc
aaggtccagaacgtcctgccgtcgatggaggccgcgttcgtcgacatcggcaagggtcgc
aacgccgtcctgtacgccggtgaggtcaacttcgaggcgctcggcatggccaacgggccg
cgccgcatcgagaccgccctcaagtccggccagtcggtcctcgtgcaggtcacgaaggac
ccgatcggccacaagggcgcccgcctgaccagccaggtctccctccccggccgctacctc
gtgtacgtgcccgagggctcgatgaccggcatcagccgcaagctcccggacaccgagcgc
gcccggctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgc
accgccgccgagggcgcgagcgaggacgagctgcgccgcgacgtcgagcgtctgcaggcg
cagtgggaggacatccagaagaaggcgaagcagatctcgacgagcgcgccgagcctgctg
tacggcgagccggacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttctcc
aaggtcatcgtcagcggtgacgaggcgtgggagaccatccacggctacgtctcgcacgtc
gccccggacctggccgaccgcctgtccaagtggacgagcgaggtcgacgtcttcgcgacg
taccggatcgacgagcagctcatgaaggcgctggaccgcaaggtctggctgccgtccggc
ggctcgctggtgatcgacaagaccgaggcgatgatcgtcgtcgacgtcaacaccggcaag
ttcaccggccagggcggcaacctcgaagagaccgtgacgaggaacaacctcgaagcggcc
gaggagatcgtgcgccagctccggctgcgcgacctcggcggcatcgtcgtcatcgacttc
atcgacatggtcctggagtccaaccgcgacctggtgctgcgccgcctcctggagtgcctg
ggccgtgaccggaccaagcaccaggtggccgaggtcacctcgctcggcctggtccagatg
acccgcaagcgggtcggccagggcctcctggagtccttctccgagacctgcgtccactgc
aacggccgcggtgtcatcgtccacatggagcagccggcggtcaccggcggtggcggcaag
cgggcgaagaagcgcggccgcggcggcgccgagcacgtccacgagcacgagcacgagacc
gtcgagtccggtgccgagcacgagaccgagaccgaggccgaggtcgcggcggagctggcc
gcgccggtggccctgcccgagcccatcgccgcggacgaggagctgtacggcagcatcgcc
gaggccgaggccgccgcctcgcgcggtcgtggtcgtcgccgcgccacccgccgggtgtcc
gcgccggccgccccggcccgtgtcgtggagaccgagacctacgtggtcgagccggagccg
gcccccgtcgtcgaggtcgtcgagccggtggccgagccggtcgtcgaggccgtggtcgag
gagaccgcagccccggccccgcgcgcccgtcgccgtgccacgcgccgggcgacgtccccg
gtcgtgtcgaccacggaggccgtcgagcccgccgtcgtcgagccggtggcgcccgtcgcc
gaggaggcccccgtggccgccccggagccggagcccgtcgtggagaccgcgcccgagccc
gtcgtcgaggaggcccccgtggccgccccgccgcgtgcccgtcgccgggtggtccgcaag
gccaccgctcccgccggttcccccgcgggcgccgaggaggcggccgtcctcgtggtcgcc
acgaccccggccgagaccgaggccgccacggcggagcccgaggcggaggccgagaccgag
gccgcgccggccaagaagacggccgcgcgcaagaccgcgaagaaggccacggccaagaag
gccgccaccaagaagacggcggcgaccaagaagacggcggcgaagaagaccaccgccaag
aaggccccggccaagaaggcggcggagaagaccgcggctccggcccaggactga
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