Streptomyces gardneri: H4W23_14660
Help
Entry
H4W23_14660 CDS
T07252
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sgx
Streptomyces gardneri
Pathway
sgx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
H4W23_14660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgx03400
]
H4W23_14660
Enzymes [BR:
sgx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
H4W23_14660
DNA repair and recombination proteins [BR:
sgx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
H4W23_14660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
AAA_22
Helicase_RecD
TraI_hel_assoc_N
PIF1
PhoH
NPHP3_N
AAA_16
nSTAND3
HTH_IclR
UvrD_C
AAA
DUF87
TrwB_AAD_bind
ABC_tran
SLFN-g3_helicase
ATPase_2
DEAD
Motif
Other DBs
NCBI-ProteinID:
QPK45753
LinkDB
All DBs
Position
complement(3265087..3267312)
Genome browser
AA seq
741 aa
AA seq
DB search
MSNEGRGPAVIEGVLERITYANEESGYTVARVDTGRGAGDLLTVVGALLGAQPGESLRME
GRWGSHPQYGKQFAVDNYTTVLPATIQGIRRYLGSGLIKGIGPVFADRITTHFGLDTLDI
LEEAPARLIEVPGLGPKRTGKITAAWEEQKAIKEVMVFLQGVGVSTSIAVRIYKKYGDAS
ISVVRNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPDRVKAGLQYALSQSTDQGHCFLP
EERLIADAVKLLQVDTGLVIECLAELAEDPEGVVREQVPGPEGVPVTAVYLVPFHRAELS
LAGQLGRLLRAREDRMPAFRDVAWDKALAWLAERTGATLAPEQEDAVRLALTRKVAVLTG
GPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLAELTGAEASTVHRLLELKPGGDA
AYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLGDL
LAPGSPVPAVRLTRIFRQAQQSGVVTNAHRINAGTPPLTQGLPDFFLFAEEETEDAARVA
VEVAARRIPAKFGLDPRRDVQVLAPMHRGPAGAGALNGLLQQAITPARPDLAEKRFGGRV
FRVGDKVTQIRNNYDKGANGVFNGTVGVVTALDPVEQRLTVRTDEDEEVPYDFDELDELA
HAYAVTIHRSQGSEYPAVVIPVTMSAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIAQAVR
TVSAGRRFTALSHRLTGGAPV
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgagggtcggggtcctgcggtgatcgaaggggtcctggagcggatcacctac
gcgaacgaggagagcgggtacacggtcgcgcgcgtcgacaccgggcgcggtgccggggac
ctgctcacggtcgtcggcgcgctgctcggcgcccagccgggcgagtcgctgcggatggag
ggccgctgggggtcccacccgcaatacggaaaacaattcgccgtcgacaactacacgacg
gtcctccccgccacgatccagggcatccgccgctacctcggctccggcctcatcaagggc
atcggcccggtcttcgccgaccgcatcaccacgcacttcggactcgacaccctcgacatc
ctcgaagaggcccccgcgcggctgatcgaggtgcccggcctgggccccaagcgcaccggg
aagatcaccgccgcctgggaggagcagaaggcgatcaaggaggtcatggtcttcctccag
ggggtcggcgtctccacctccatcgccgtgcggatctacaagaagtacggggacgcctcc
atctccgtcgtgcggaaccagccctaccggctcgccgccgacgtctggggcatcggcttc
ctcaccgccgacaagatcgcccaggccgtcggcatcccgcacgacagcccggaccgggtg
aaggccggcctgcagtacgccctgtcgcagtccaccgaccagggccactgcttcctgccc
gaggagcggctgatcgcggacgccgtcaagctcctccaggtcgacacggggctcgtcatc
gagtgcctggccgagctcgccgaggaccccgagggggtcgtacgggagcaggtgcccggc
cccgagggggtgccggtgaccgccgtgtacctggtgcccttccaccgcgccgagctgtcg
ctcgccgggcagctgggccggctgctgcgggcccgggaggaccgtatgccggccttccgg
gacgtggcctgggacaaggcgctggcctggctcgcggagcgcaccggggccacgctcgcg
cccgagcaggaggacgcggtccggctggccctgacccggaaggtcgcggtcctcaccggc
ggccccggctgcggcaagtccttcacggtccgctcgatcgtggagctggcccgcgccaag
cgggccaaggtggtcctcgccgcccccaccgggcgggccgccaagcggctcgccgagctg
accggcgccgaggcctcgaccgtccaccggctcctggagctcaagccgggcggggacgcg
gcctacgaccgtgaccggccgctcgacgccgacctggtcgtcgtcgacgaggcctccatg
ctcgacctgctcctggcgaacaagctggtcaaggcggtggcacccggtgcgcacctgctc
ctggtgggggacgtggaccagctcccgtcggtcggcgccggcgaggtcctcggcgatctg
ctcgcccccggcagccccgtccccgccgtgcggctgacccggatcttccggcaggcccag
cagtccggggtcgtcaccaacgcgcaccggatcaacgccggcaccccgcccctcacccag
ggcctgccggacttcttcctcttcgccgaggaggagaccgaggacgccgcccgggtcgcc
gtggaggtcgcggcccggcgcattccggccaagttcggcctcgacccgcgccgggacgtc
caggtcctggcccccatgcaccgcggcccggcgggcgcgggcgcgctcaacggcctgctc
cagcaggcgattaccccggcgcgccccgatctggcggagaagcggttcggcggccgggtg
ttccgggtaggcgacaaagtgacgcagatcaggaacaactacgacaagggtgcgaacggc
gtcttcaacggcacggtcggcgtcgtcaccgccctcgatcccgtcgagcagcggctgacc
gtgcggacggacgaggacgaggaggtgccctacgacttcgacgagctggatgaactggcc
cacgcgtacgcggtcaccatccaccgctcgcagggcagcgagtatccggcggtggtgatc
ccggtcaccatgagcgcctggatgatgcttcagcggaacctgctctacacggccgtgacc
cgcgccaagaagctcgtcgtgctggtcggctcccgtcgggcgatcgcccaggcggtccgc
acggtctcggcgggcagacgctttaccgcactgtcccatcgcctcacaggtggggctccc
gtgtga
DBGET
integrated database retrieval system
