Streptomyces gardneri: H4W23_17860
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Entry
H4W23_17860 CDS
T07252
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgx
Streptomyces gardneri
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgx03016
]
H4W23_17860
Enzymes [BR:
sgx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H4W23_17860
Transfer RNA biogenesis [BR:
sgx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H4W23_17860
Prokaryotic type
tRNA splicing ligases
H4W23_17860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QPK46309
LinkDB
All DBs
Position
complement(3975474..3976667)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYVEVPGAKVPIRMWTDPSTVDDGAMQQLRNTATLPWIKGLAVMPDVHFGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHRDEVDPS
RLFQFPTAGWGDFWSRFDGIAESVKFRRERAGQQMGTLGSGNHMIEICLDESGSVWLMLH
SGSRNIGKELAEYHIGVAQKLPHNQGLVDRDLAVFVSDTPQMADYRNDLYWAQEYAKYNR
AIMMALLKEVIRREFRKAKVSFETEISCHHNYVAEERYEGMDLLVTRKGAIRAGRGDLGI
IPGSMGTSSYIVKGLGNDKAFNSASHGAGRRMSRSAAKRRFTVRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVMAQQRDLVEVVAKLKQFICIKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaggtgccgggggcgaaagtacccatccggatgtggaccgatccttcc
acggtcgacgacggcgccatgcagcagctgcggaacacggcgacgctgccgtggatcaag
ggcctggccgtgatgccggacgtgcacttcggcaagggcgcgacggtcggttcggtgatc
gcgatgcagggggcggtgtgtccggcggcggtcggtgtggacatcggctgcgggatgtcg
gcggtcaagacgtcgttgacggcgaacgacctgccgggtgatctgtcgcggctgcggtcg
aagatcgagcaggcgatcccggtggggcggggcatgcaccgggacgaggtggatccctcg
cggttgttccagttcccgacggcggggtggggcgacttctggtcgcgcttcgacgggatc
gcggaatcggtcaagttccgtcgggaacgtgcaggtcagcagatgggaacgctcggaagc
ggaaaccacatgatcgaaatctgtctcgatgagtcaggttcggtctggctgatgctgcac
tccggctcccgcaacatcggcaaggagctggccgagtaccacatcggcgtggcgcagaag
ctgccgcacaaccagggcctggtcgaccgcgacctggcggtgttcgtctcggacaccccg
cagatggcggactaccgcaacgatctctactgggcgcaggagtacgccaagtacaaccgc
gcgatcatgatggcgctcctgaaggaagtgatccgcagggagttccggaaggcgaaggtc
tccttcgagaccgagatctcctgccatcacaactatgtggcggaggagcggtacgaaggc
atggacctgctggtcacgcggaagggtgccattcgggccggccgcggagacctcgggatc
atcccgggctcgatgggcaccagctcgtacatcgtgaaggggctcggcaacgataaggcc
ttcaactccgcctcgcacggtgcggggcgcaggatgagccgaagcgctgcgaagcggcgc
ttcacggtgcgagacctggaggagcagacgcggggcgtggagtgccgtaaggactccggt
gtcgtggacgagatcccgggcgcgtacaagccgatcgaacaggtgatggcgcagcagcgg
gacctggtcgaggtggtcgccaagctgaagcagttcatctgcatcaagggctga
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