Streptomyces gardneri: H4W23_18635
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Entry
H4W23_18635 CDS
T07252
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sgx
Streptomyces gardneri
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgx03032
]
H4W23_18635 (topA)
03400 DNA repair and recombination proteins [BR:
sgx03400
]
H4W23_18635 (topA)
Enzymes [BR:
sgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H4W23_18635 (topA)
DNA replication proteins [BR:
sgx03032
]
Prokaryotic type
DNA Topoisomerases
H4W23_18635 (topA)
DNA repair and recombination proteins [BR:
sgx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H4W23_18635 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QPK46447
LinkDB
All DBs
Position
complement(4140075..4142945)
Genome browser
AA seq
956 aa
AA seq
DB search
MSPTSETAHGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPSGAAEVPEKYTGE
VRRLGVDVEHDFQPIYVVNADKKAQVRKLKELLAESDELFLATDEDREGEAIAWHLQEVL
KPKVPVHRMVFHEITKDAIREAVANPRELNQRMVDAQETRRILDRLYGYEVSPVLWKKVM
PKLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFATGRTGDASDPSQLVARLAAVD
GKRVAQGRDFGADGRLKSDSVLHLDETNARALAAALADTAFAVRSVESKPYRRSPYAPFR
TTTLQQEASRKLGFGAKATMQVAQKLYENGFITYMRTDSTILSDTAVTAARAQVTQLYGA
DYLPEKPRVYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFRLYELIWKRTVASQMK
DATGNSVTVKIGGRAADGRDAEFSASGKTITFHGFMKAYVEGADDPNAELDDRERRLPQV
AQGDALTADEITVDGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKK
GTALVPSFLSFAVVNLLETHFGRLVDYDFTARMEDDLDRIARGEAKSVPWLKRFYFGEGD
GSGAGASGGAADAGNGDGDHLGGLKELVTDLGAIDAREISSFPVGNGIVLRVGRYGPYVE
RGEKDAEGHQRADVPDDLAPDELTVEHAEELLAKPSGDFELGADPVSGNQIVAKDGRYGP
YVTEILPEGTPKTGKNAVKPRTASLFKSMALDTVTLEDALRLMSLPRVVGADAEGVEITA
QNGRYGPYLKKGTDSRSLTEEEQLFTITLEEALAIYAQPKQRGRAAAKPPLKELGTDPVS
EKPVVVKDGRFGPYVTDGETNATLRTDDSVETITPERGYELLAEKRAKGPAKKAAKKAPA
KKATAKKAPAKKTATKTAAKKTTAAKTTASKTAAAKKTTAAKKTTAAKKTAAAQPE
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgagaccgcacacggcggccgccgactcgtcatcgtcgagtcgcct
gccaaggcgaagacgatcaagggctacctcggccccggctacgtcgtcgaggcgagcgtc
gggcacatccgcgacctcccgagcggtgccgccgaggtgccggagaagtacaccggcgag
gtgcgccgcctcggagtcgacgtcgagcatgacttccagcccatctatgtcgtcaatgcc
gacaagaaggcgcaggtcaggaagctcaaggagctgctcgccgagtccgacgaactcttc
ctcgccaccgatgaggaccgcgagggcgaggccatcgcgtggcacctccaggaagtcctg
aagcccaaggtcccggtccaccggatggtcttccacgagatcaccaaggacgcgatccgc
gaggccgtcgccaacccgcgcgagctgaaccagcgcatggtcgacgcccaggagacccgc
cgcatcctcgaccgcctctacggctacgaggtctcgccggtcctgtggaagaaggtcatg
ccgaagctgtcggcgggccgcgtccagtcggtggccacccgcctcgtcgtcgagagggag
cgcgagcgcatcgccttccgttccgccgagtactgggacctcaccggcaccttcgccacc
ggccgcaccggtgacgcctccgacccgtcgcagctggtcgcgcgcctcgccgcggtcgac
ggcaagcgggtcgcgcagggccgtgacttcggcgccgacggccggctgaagagcgacagc
gtcctccacctggacgagacgaacgcccgcgccctggccgccgcgctcgccgacaccgcg
ttcgcggtgcgctcggtcgagtcgaagccctaccgccgctccccgtacgcccccttccgc
accacgaccctccagcaggaggcgagccgcaagctgggcttcggtgcgaaggcgaccatg
caggtggcgcagaagctgtacgagaacggcttcatcacctacatgcgtacggactccacg
atcctgtccgacaccgccgtcacggcggcccgggcgcaggtcacgcagctctacggcgcc
gactacctgccggagaagccgcgcgtctacgccggcaaggtcaagaacgcgcaggaggcg
cacgaggcgattcgcccttcgggtgatcgtttccgcacccccgcggagaccggcctgacc
ggcgaccagttccggctctacgagctcatctggaagcggaccgtcgcctcccagatgaag
gacgccaccggcaactcggtcaccgtgaagatcggcggccgggccgccgacggccgcgac
gccgagttcagcgcctccggcaagacgatcaccttccacggcttcatgaaggcgtacgtc
gaaggcgccgacgacccgaacgcggagctcgacgaccgcgagcggcgcctgccgcaggtc
gcccagggcgacgcgctgaccgccgacgagatcacggtcgacggccacgcgaccaagccg
ccggcccgctacaccgaggcctcgctggtcaaggagctcgaagagcgcgagatcggccgc
ccgtcgacgtacgcgtcgatcatcggcacgatcctcgaccgcggctacgtcttcaagaag
ggcacggccctcgtgccgtccttcctgagcttcgccgtcgtcaacctcctggagacgcac
ttcgggcggctcgtcgactacgacttcaccgcccggatggaggacgacctcgaccgcatc
gcgcggggcgaggccaagtccgtgccgtggctgaagcgtttctacttcggtgagggcgac
ggctccggcgcgggcgcctccggcggcgcggcggacgcggggaacggcgacggggaccac
ctcggcggcctcaaggagctcgtcaccgacctcggtgcgatcgacgcgcgcgagatctcc
tccttccccgtcggcaacggcatcgtgctgcgcgtcggccgctacggcccgtacgtcgag
cgcggcgagaaggacgcggagggccaccagcgcgccgacgtcccggacgacctcgcgccc
gacgagctgaccgtcgagcacgccgaggagctgctcgccaagccgagcggcgacttcgag
ctgggcgccgacccggtcagcggcaaccagatcgtcgcgaaggacggccgctacggcccg
tacgtcacggagatcctgcccgagggcaccccgaagaccggcaagaacgcggtgaagccg
cggacggcctccctcttcaagtcgatggcgctcgacaccgtcaccctggaggacgcgctc
cggctgatgtcccttccccgggtcgtcggcgcggacgccgagggcgtcgagatcaccgcg
cagaacggccgctacggcccgtacctgaagaagggcacggactcgcggtcgctcaccgag
gaggagcagctcttcacgatcacgctcgaagaggcgctcgcgatctacgcgcagccgaag
cagcgcggccgggccgcggccaagccgccgctgaaggagctgggcaccgacccggtcagc
gagaagcccgtggtcgtcaaggacgggcgcttcggcccgtacgtgacggacggcgagacc
aacgccaccctgcgcaccgacgacagcgtggagacgatcacgccggagcgcggttacgag
ctcctcgcggagaagcgcgccaagggaccggcgaagaaggccgccaagaaggccccggcg
aagaaggccaccgcgaagaaggcgccggccaagaagacggccacgaagacggcggcgaag
aagaccaccgccgccaagacgaccgcctccaagacggcggccgcgaagaagaccacggcc
gcgaagaagacgaccgcggccaagaagacggcggcggcgcagccggagtag
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