Streptomyces gardneri: H4W23_22845
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Entry
H4W23_22845 CDS
T07252
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sgx
Streptomyces gardneri
Pathway
sgx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
H4W23_22845
09124 Replication and repair
03420 Nucleotide excision repair
H4W23_22845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgx03021
]
H4W23_22845
03400 DNA repair and recombination proteins [BR:
sgx03400
]
H4W23_22845
Enzymes [BR:
sgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H4W23_22845
Transcription machinery [BR:
sgx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
H4W23_22845
DNA repair and recombination proteins [BR:
sgx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
H4W23_22845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
YflT
DUF447_C
Motif
Other DBs
NCBI-ProteinID:
QPK47177
LinkDB
All DBs
Position
complement(5021176..5022816)
Genome browser
AA seq
546 aa
AA seq
DB search
MNGPLIVQSDKTLLLEVDHELAEACRRAIAPFAELERAPEHIHTYRLTPLGLWNARAAGH
DAEQVVDALVEYSRYPVPHALLVDIAETMDRYGRLTLSKHPTHGLVLTSTDRPVLEEILR
SKKVQPLVGARIDEDTVAVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHPIELAEDGWT
LRPYQRQAVDGFWHGGSGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKSEL
VKRTSLTEDEIGEYSGTKKEIRPVTIATYQVLTTKRKGIYPHLELFDSRDWGLVVYDEVH
LLPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGYIAPA
DCVEVRVNLTDSERLAYATAEPEEKYRFCATTATKRKVTEALVKKFEGQQILVIGQYIDQ
LDELGEHLDAPVIKGETSNAQREKLFDAFRTGEISVLVVSKVANFSIDLPEATVAIQVSG
TFGSRQEEAQRLGRVLRPKSDGHQAHFYSVVARDTIDQDFAAHRQRFLAEQGYAYRIVDA
DELLAP
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgggcctctcatcgtccagagcgacaagacgctgctcctggaggtcgaccatgag
ctcgccgaggcgtgccgacgggccatcgcgcccttcgcggagctggagcgggcgcccgag
cacatccacacctaccggctgacgccgctcggcctgtggaacgcgcgtgccgccgggcac
gacgccgaacaggtcgtcgacgcgctcgtcgagtactcccgctaccccgtgccgcacgcg
ctgctcgtcgacatcgccgagaccatggaccggtacgggcggctcacgctgtccaagcac
cccacccacgggctcgtcctgaccagcaccgaccggcccgtcctggaggagatcctccgg
tcgaagaaggtgcagccgctggtcggggcgcggatcgacgaggacaccgtcgccgtgcac
ccctccgagcgcgggcagatcaagcagacgctgctgaagctcggctggccggccgaggac
ctcgccgggtacgtcgacggggaggcccacccgatcgagctcgccgaggacggctggacc
ctgcgcccgtaccagcggcaggccgtcgacggcttctggcacggcggttccggggtcgtc
gtgctgccctgcggcgccgggaagacgctggtcggggccggggcgatggccgaggccaag
gcgaccacgctgatcctcgtgaccaacaccgtctccgcccgccagtggaagagcgagctg
gtcaagcggacctcgctcaccgaggacgagatcggcgagtacagcgggacgaagaaggag
atccggcccgtcaccatcgccacctaccaggtcctcacgaccaagcggaagggcatctac
ccgcacctggagctcttcgactcccgggactggggcctcgtcgtctacgacgaggtgcac
ctgctgcccgcgcccgtcttcaagttcaccgccgacctccaggcgcggcggcggctgggg
ctgaccgcgaccctcgtccgggaggacgggcgcgagtccgacgtcttctcgctgatcggg
cccaagcgcttcgacgcaccgtggaaggagatcgaggcgcaggggtacatcgcgcccgcc
gactgcgtcgaggtccgggtcaatctcaccgactccgagcggctcgcctacgcgacggcc
gagccggaggagaagtaccgcttctgcgcgacgaccgcgacgaagcggaaggtgacggag
gccctggtgaagaagttcgaggggcagcagatcctcgtcatcgggcagtacatcgaccag
ctcgacgagctcggcgagcacctggacgcaccggtcatcaagggcgagacgtcgaacgcg
cagcgggagaagctcttcgacgcgttccgtacgggcgagatcagcgtgctcgtcgtctcg
aaggtcgcgaacttctcgatcgacctgccggaggcgacggtcgcgatccaggtctcgggc
accttcggctcacgccaggaggaggcgcagcgcctcggccgggtcctgcggccgaagtcc
gacgggcaccaggcgcacttctactccgtcgtcgcgcgcgacacgatcgaccaggacttc
gcggcgcaccggcagcggttcctggcggagcaggggtacgcgtaccggatcgtcgacgcg
gacgagctgctggccccctag
DBGET
integrated database retrieval system
