Streptomyces gardneri: H4W23_23010
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Entry
H4W23_23010 CDS
T07252
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sgx
Streptomyces gardneri
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgx03016
]
H4W23_23010 (thpR)
Enzymes [BR:
sgx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
H4W23_23010 (thpR)
Transfer RNA biogenesis [BR:
sgx03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
H4W23_23010 (thpR)
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QPK47206
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All DBs
Position
5057516..5058100
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AA seq
194 aa
AA seq
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MRLFAAVVPPAEQLTELGHVTDTLHRLPGADRLRWTSRPGWHLTLAFMGEVDEELLPELR
VRLARAAHRTPPFPLRLHGGGHFGRRALWTGVAGDLDELRLLAERADAAARRAGVAMEEH
RRYQAHLTLARARTDETDLRPFLDTLHPFEGRRWQVAELALVRSRLPVSGVQGEQPRYET
LDAWPLEGGEARSG
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttttcgccgccgtcgtgccgcccgcggagcagctgaccgagctcggacacgtc
accgacaccctgcaccggctgcccggggccgaccggctgcgctggacctcgcggcccggc
tggcacctcacgctcgccttcatgggcgaggtcgacgaggagctgctgcccgagctgcgg
gtccggctcgcccgggccgcgcaccgcaccccgccgttcccgctgcgcctccacggcggc
ggccacttcggccgccgtgccctgtggacgggcgtcgccggggacctggacgagctgcgg
ctgctggccgagcgggccgacgccgccgcgcgccgggccggggtcgcgatggaggagcac
cgccgctaccaggcgcatctgacgctcgcccgcgcgcggacggacgagacggacctccgg
ccgttcctcgacacgctgcaccccttcgagggccgccgctggcaggtggccgagctggcg
ctcgtccgctcgcgcctgccggtgagcggggtgcagggcgagcagccccggtacgagacg
ctcgacgcctggccccttgaagggggagaggcgcggtcgggttaa
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