Streptomyces gardneri: H4W23_24030
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Entry
H4W23_24030 CDS
T07252
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgx
Streptomyces gardneri
Pathway
sgx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H4W23_24030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgx03021
]
H4W23_24030
03400 DNA repair and recombination proteins [BR:
sgx03400
]
H4W23_24030
Enzymes [BR:
sgx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H4W23_24030
Transcription machinery [BR:
sgx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H4W23_24030
DNA repair and recombination proteins [BR:
sgx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H4W23_24030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
QPK47391
LinkDB
All DBs
Position
5275306..5279220
Genome browser
AA seq
1304 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDDERRTRDLPSLEAHVSVERQQIENRRDSDLEARAKKLEND
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTANSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDTKGE
GRAFGSTAEAIMAFDAGELALQSEIDIRFPVGTVAPRGWVPPVTEEGDDSVAAGEWQQGD
SFRLRTTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAG
FYWATRSGVTVAISDVVVPEAKKEIVKGYEAQDEKVQKQYERGLITKEERTQELIAIWTK
ATNEVAEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASF
REGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLR
IAAKDEAGVLRKTDDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVNAGVEEVK
TRSVLTCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVVELFEARQPKGVAPISEAAGRIRIEETEKTKKIVVTPDDGTDETAFPIS
KRARLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVAEVQKVYNSQGVSIHDK
HIEIIIRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITK
ASLATESWLSAASFQETTRVLTDAAINAKSDSLVGLKENVIIGKLIPAGTGLARYRNIRV
EPTEEAKAAMYSAVGYDDIDYSPFGSGSGQAVPLEDYDYGPYNQ
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggtctggctaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcggtgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctcggatacctgctcgacctc
gccccgaaggaccttgagaaggtcatctacttcgcggcgtacatgatcacgttcgtcgac
gacgagcgtcgtacgcgtgacctgccctcccttgaggcgcacgtctccgtcgagcgtcag
cagatcgagaaccgtcgcgactccgacctggaggcccgcgccaagaagctcgagaacgac
ctggccgagcttgaggccgagggtgcgaaggccgacgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtcttgac
gaggtctggtcgcgcttcaagaacctcaaggtccaggacctggagggcgacgagctcctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctggaggaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccgcgaacagccccaagggcatggttctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctgaagcgactccttgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgcttcaggaggccgtggacgcc
ctcttcgacaacggtcgtcgtggtcgtccggtgaccggtcccggtaaccgtcccctgaag
tccctcagcgacatgctgaagggcaagcagggtcgattccgtcagaacctgctcggcaag
cgtgtggactactccgcgcgttccgtcatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccccagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggccgtccggtcacgatgccgacccaggac
atggtcctcggtctgttcttcctgaccaccgacggtgagctccgtgacaccaagggcgag
ggccgcgcgttcggctccacggccgaggcgatcatggcgttcgacgccggcgagctcgct
ctccagtcggagatcgacatccgcttccccgtcggcaccgtcgctccccgcggctgggtt
cccccggtcacggaggagggtgacgacagcgtcgccgccggtgagtggcagcagggtgac
tcgttccgtctgcggacgaccctgggccgcgcgctcttcaacgagctgctgcccgaggac
tacccgttcgtcgactactccgtcggcaagaagcagctctccgagatcgtcaacgacctc
gccgagcgctaccccaaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggc
ttctactgggcgacccgttccggcgtcaccgtggccatctccgacgtcgtcgttcccgag
gcgaagaaggagatcgtcaagggctacgaggcgcaggacgagaaggtccagaagcagtac
gagcgcggcctgatcaccaaggaagagcgcacgcaggagctcatcgcgatctggaccaag
gcgaccaacgaggttgccgaggcgatgaacgcgaacttccccaagacgaaccccatcttc
atgatggttgactcgggtgcccgaggaaacatgatgcagatgcgtcagatcgccggtatg
cgtggtctggtgtcgaacgccaagaacgagacgatcccgcgtcccatcaaggcgtcgttc
cgcgagggcctcaccgtcctcgagtacttcatctccacgcacggtgcccgtaagggtctc
gccgacaccgccctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtc
tcgcaggacgtcatcatccgcgaggaggactgtggcaccgagcgcggtctgaagctgcgg
atcgcggccaaggacgaggccggtgtcctgcggaagacggacgacgtcgagacctccgtg
tacgcgcggatgctcgccgaggacgtcgtcgtcgacggcaaggtcatcgcgccggccaac
gtcgacctgggtgacgtgctcatcgacgccctcgtcaacgcgggcgtcgaggaggtcaag
acccgctcggtcctgacctgtgagtccgcggtcggtacgtgtgcgttctgctacggccgt
tcgctcgccaccggcaagctggtcgacatcggtgaggcggtcggcatcatcgccgcccag
tccatcggtgagcccggtacccagctgacgatgcgtaccttccacaccggtggtgtggcc
ggtgacgacatcacccagggtctgccccgtgtcgtcgagctcttcgaggctcgtcagccc
aagggtgtcgccccgatctcggaggcggccggccgcatccgtatcgaggagaccgagaag
accaagaagatcgtcgtcaccccggacgacggcaccgacgagacggcgttcccgatctcg
aagcgtgcccgtctgctcgtgggcgagggcgaccacgtcgaggtgggccagaagctcacc
gtgggtgccaccaacccgcacgacgtgctgcgcatcctcggtcagcgtgcggtccaggtc
cacctggtcgccgaggtccagaaggtctacaactcgcagggcgtgtcgatccacgacaag
cacatcgagatcatcatccggcagatgctgcgccgcgtgacgatcatcgagtccggcgac
gcggagctgctgccgggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgt
gtggtcaccgagggcggtcaccccgcctccggccgtccgcagctgatgggtatcaccaag
gcctcgctcgccaccgagtcgtggctgtcggcggcgtccttccaggagacgacccgggtt
ctgaccgacgcggcgatcaacgccaagtcggactccctggtcggcctcaaggagaacgtc
atcatcggtaagctcatcccggccggtacgggcctcgcccgctaccgcaacatccgggtc
gagccgaccgaagaggccaaggccgcgatgtactcggccgtcggctacgacgacatcgac
tactcgccgttcggctcgggctccggccaggccgttccgctggaggactacgactacggt
ccgtacaaccagtaa
DBGET
integrated database retrieval system
