Streptomyces gardneri: H4W23_33655
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Entry
H4W23_33655 CDS
T07252
Name
(GenBank) rhamnogalacturonase B precursor
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sgx
Streptomyces gardneri
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
H4W23_33655
Enzymes [BR:
sgx01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
H4W23_33655
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Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
DUF4858
Motif
Other DBs
NCBI-ProteinID:
QPK49097
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All DBs
Position
7460664..7462337
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AA seq
557 aa
AA seq
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MRSYDDTISQHPLRRRTLLGAAAVGVALAAVEGTAAAAGFGWSDDGTQYVLDTGAGLVFK
VSKSTGDLTSLVYKGTEYEGYGGKHSHVESGLGASTVTLAQIGSTVLVTVVHGTLRHYIA
ARSGLNNVYLWTDKADTSFTATRFIARLKPGIFPNTGPDSWVEGADTVIEAGDVWQRADG
HTRSKHYSGVRVTDYDTIGYTTGSVGLWMIRSNHEKASGGPFYRSLLRHSNELGVGLYEI
LHYNQSQTEAMRFGLQGPYLLAFTDGGTPSPALFAANHDTSWVDGLGIPGWVGAAGRGRV
AGVGLAGMDADHPYTVGFANADAQYWTRATAGTGAFSCRGMLPGIYTLTVYKGELAVHTG
TVTVTAGTATALHTITLTNDPSAAPAIWRIGDWDGTPGEFKNAALMTYAHPADVRAASWT
GNVVLGAGDVSTSFPCYVWKDVNDGVLVYFRLTAAQAAAAHTLRIGVTTAFLNGRPQVTV
NDWVSAIPSPPTQPATRSLTNGSYRGNNHTFTYVVPASAWKTDPSQYNVLRLNVVSGSTG
TGFLSAGTAFDCVDLLP
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcgtacgacgacaccatctcgcagcaccccctccgccgccgcacccttctcggc
gcagcggccgtcggagtcgccctcgccgccgtcgaaggcaccgccgcggcggccggcttc
ggctggagcgacgacggcacgcagtacgtcctcgacaccggcgccggactcgtgttcaag
gtctcgaagtcgaccggggacctcacgtccctcgtctacaagggcaccgagtacgaggga
tacggcggaaagcactcgcacgtcgagtccggcctcggcgcctccaccgtcaccctcgcc
cagatcggctcgaccgtcctcgtcaccgtcgtccacggcacgctccgccactacatcgcg
gcccgctccggcctgaacaacgtctacctgtggaccgacaaggccgacacctccttcacc
gcgacccgcttcatcgcccgcctcaagccggggatcttcccgaacaccggccccgactcc
tgggtcgagggggcggacaccgtcatcgaggccggggacgtctggcagcgcgccgacggc
cacacccgctccaagcactactcgggcgtccgggtcacggactacgacaccatcggctac
accaccggctcggtcggcctctggatgatccgctccaaccacgaaaaggcctcgggtggc
ccgttctaccgctccctcctgcgccactcgaacgagctcggcgtcggcctgtacgagatc
ctccactacaaccagtcccagacggaggcgatgcgcttcggcctccagggcccctacctg
ctcgccttcaccgacggcgggacaccctccccggcgctcttcgccgccaaccacgacacc
tcctgggtcgacggcctcggcatccccggctgggtcggcgccgcgggccgcggcagggtc
gcgggcgtcggtctcgcgggcatggacgcggaccacccgtacaccgtcggcttcgccaac
gccgacgcccagtactggacccgcgccaccgccggcaccggcgccttctcctgccgggga
atgctccccggcatctacaccctcaccgtctacaaaggtgaactcgccgtgcacaccggc
acggtgaccgtcaccgccggcacggccaccgccctccacaccatcaccctcaccaacgac
ccgagcgccgcccccgcgatctggcggatcggcgactgggacggaacccccggcgagttc
aagaacgcagccctcatgacgtacgcccaccccgcggacgtccgggccgcctcctggacc
gggaacgtcgtcctgggcgccggcgacgtctccacctccttcccctgctacgtctggaag
gacgtcaacgacggcgtcctcgtgtacttcaggctcaccgccgcccaggccgccgccgcg
cacaccctccggatcggcgtcaccaccgccttcctcaacgggcgaccccaggtcaccgtc
aacgactgggtctccgcgatcccctcgcccccgacgcagccggcgacccgctcgctgacc
aacggctcgtaccggggcaacaaccacaccttcacgtacgtcgtgccggcgagcgcctgg
aagaccgacccgagccagtacaacgtcctcaggctgaacgtcgtgagcggctccaccggc
accggattcctgagtgcgggcaccgcgttcgactgcgtcgacctgctgccctga
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