Staphylococcus haemolyticus JCSC1435: SH1650
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Entry
SH1650 CDS
T00250
Symbol
polC
Name
(GenBank) DNA polymerase III alpha chain PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
sha
Staphylococcus haemolyticus JCSC1435
Pathway
sha03030
DNA replication
sha03430
Mismatch repair
sha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SH1650 (polC)
03430 Mismatch repair
SH1650 (polC)
03440 Homologous recombination
SH1650 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sha03032
]
SH1650 (polC)
03400 DNA repair and recombination proteins [BR:
sha03400
]
SH1650 (polC)
Enzymes [BR:
sha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SH1650 (polC)
DNA replication proteins [BR:
sha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SH1650 (polC)
DNA repair and recombination proteins [BR:
sha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SH1650 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
HHH_3
tRNA_anti-codon
RNase_H_2
T2SSK
YhfH
Motif
Other DBs
NCBI-ProteinID:
BAE04959
NITE:
SH1650
UniProt:
Q4L5W6
LinkDB
All DBs
Position
complement(1699467..1703783)
Genome browser
AA seq
1438 aa
AA seq
DB search
MAMTNQEKFKVLADQIKVSNQLDQTIIEKGELTRVDVSNKNRTWEFQITLPYFLSHEDYL
IFTNAITEEFKEIAKVDWHFTIQDTSNQDEHAIKYFGHCIEHTALSPKVKGQLKQKRLIM
SGNVLKVMTSNDIERNHFDKVCNGSLVKAFRKCGFDIDKVVFETDDSSSYDDLASLEAHI
QEEDEKSAREATEKIEKIKAEKAKQQDNNESNVDKCQIGKPIQIDNIKPIESIIEEEFKV
AIEGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRKNKDDLDHFKALSVGKWVRAQ
GRIEEDTFVRDLVMMMTDIEEIKKTPKQDKAEEKRVEFHLHTSMSQMDGIPNISAYVNQA
AKWGHKAIAVTDHNVVQAFPDAHGAAEKNGIKMIYGMEGMLVDDGVPIAYKPTDRDLKEA
TYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIINLTHITDDM
LTDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT
INTEYGKHGLNFLAKKYGVELTQHHRAIYDTESTAYIFIKMVQQMKELGVTNHKDINQKL
SNEDAYKRARPTHVTLIVQTQEGLKNLFKIVSASLVKYYYRTPRIPRSLLNEYREGILVG
TACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDRELIRDTETLYEIYERI
LKAGESTGIPVIATGNAHYLYEHDAIARKILIASQPGNPLNRSTLPEAHFRTTDEMLDEF
HFLGEEKAHEIVVKNTNELADRIEKVIPIKDQLFTPRMDGANEEIRELSYTNAKKLYGED
LPQIVIDRLEKELASIIGNGFSVIYLISQRLVKKSLDDGYLVGSRGSVGSSFVATMTEIT
EVNPLPPHYICPNCKTSEFFDDGSVGSGFDLPDKQCSTCGAELIKEGQDIPFETFLGFKG
DKVPDIDLNFSGEYQPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHK
RGAEIDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQSASWMTTHFDFH
SIHDNVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDKETMQIFSSPESLGVTEEEILC
KTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIRSGICDLSS
VIGCRDDIMVYLMYAGLEPSMAFKTMESVRKGKGLTEEMIDAMKENNVPDWYLDSCLKIK
YMFPKAHAAAYVLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKESIKNTVKDM
YSRYMDLGKKEKDVLTVLEIMNEMAHRGFRMQPISLEKSQAFDFIIEGDTLIPPFISVPG
LGENVAKRIVEAREDGPFLSKEDLNKKAGLSQKIIEYLDDLGSLPNLPDKAQLSIFDM
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgacgaatcaagaaaaattcaaagtactcgctgaccagattaaagtttccaat
caactagatcaaacaataattgaaaaaggtgaattaacgcgagtagatgtgtcaaataaa
aatagaacgtgggaatttcaaattacattgccatattttctatcacatgaagattattta
atattcactaatgcgattactgaagaatttaaagaaattgccaaagttgattggcatttt
acaattcaagatacaagtaatcaagatgagcatgctatcaaatattttggtcattgtata
gaacacactgcactttcacctaaagtaaaaggtcaacttaaacagaagcgtttaattatg
tctggtaatgtgttgaaagtaatgacctctaatgacatcgaaagaaatcactttgacaaa
gtatgtaatggtagcttagtaaaagcttttcgtaaatgtggttttgatattgataaagtt
gtttttgaaacagacgactcaagttcttatgatgatttagcttcattagaagcacatatt
caagaagaagatgaaaaaagtgctcgtgaagcaactgaaaaaattgaaaaaatcaaagca
gaaaaagcgaaacaacaagataacaatgaaagtaatgttgataagtgtcaaattggtaaa
ccgatacaaattgataatataaaaccaattgaatcaatcattgaggaagagttcaaagta
gcgattgaaggggttatatttgatattaacctaaaagaattaaagagtggtcgtcatatt
gttgagttaaaagtcacagactacacagattctcttgtacttaagatgtttacaagaaaa
aataaagatgatttagatcactttaaggcactaagtgtaggtaaatgggtacgcgctcaa
ggacgtattgaagaagacacgtttgtaagagatttagtaatgatgatgactgatatagaa
gaaatcaaaaagacacctaagcaagataaagctgaagaaaagcgtgtagagtttcattta
catacatcaatgagtcaaatggatggtattcctaatataagtgcatatgttaatcaagct
gcaaaatggggacataaagcgatagcagttacagatcataatgtcgttcaagcctttcct
gatgctcatggtgccgctgaaaaaaatggtattaaaatgatttatggtatggaaggtatg
ctcgtagatgacggagtacctattgcttacaaaccaacagatcgagatcttaaagaagca
acttatgttgtatttgacgttgaaacaactggactttcaaaccaatacgatcaaattata
gaattggccgccgttaaagttaaagacggggaaattattgataaatttgaacgatttagt
aatccacacgaaaaattatcagaaacaatcattaatttaactcacattactgatgatatg
ttgactgatgcacctgagattgaggaagtattgactgaatttaaagagtgggttggggat
gctatatttgtagcacataatgcatcatttgatatgggctttattgacactggctatgaa
agacttggctttgggccatcaacgaatggtgtcattgatactttagaactatcacgtacg
attaatactgaatatggtaaacacggattaaactttttagcgaaaaagtatggtgtagaa
ttaactcaacaccatagagctatttatgatactgagtctacagcttatatcttcattaag
atggttcagcaaatgaaagagttaggagttacaaatcataaagacattaatcaaaaactg
tctaatgaagatgcatataaacgtgcacgtccgacacatgtgacattaattgttcaaaca
caggaaggcttaaagaacttatttaaaattgtaagtgcctcattagttaaatactattat
cgaactcctagaattccacgttcattattaaatgaataccgtgaaggcatactagttgga
acagcttgtgatgaaggtgaattattcactgctgtaatgcagagagaccaatcggaagtt
gaaaaaatcgctaaatattatgattttattgaagtacaaccacctaaactgtatcaagat
cttattgatagagaactcattagagatactgaaacactttatgaaatttatgaacgtata
ttaaaagctggagaaagtacaggtattccagtaatagcgacaggaaatgcgcattattta
tatgaacatgacgcaattgctcgtaaaatcttaatcgcatctcaacctggtaatcctttg
aatcgctcaactttaccagaagcgcattttagaacgacagatgagatgttagatgagttt
cactttttaggcgaagaaaaagcacatgaaatagttgttaaaaacacaaatgaattagcg
gaccgaattgaaaaagttattccaattaaagatcaattgtttacgccacgtatggatgga
gcaaatgaagaaattcgtgaactaagctacacgaatgccaaaaaattatatggtgaagat
ttaccacaaatcgtaatcgatcgtcttgaaaaagaactagcaagtatcatcggaaatggt
ttctcggttatctatttaatttcacaacgtcttgttaaaaaatctctagatgatggatat
ttagtaggttcgcgtggttcggttggatctagttttgtggcaacaatgactgaaataact
gaagttaatccattgccacctcattacatttgtcctaactgtaaaacgagtgaattcttt
gatgatgggtctgtaggttcagggtttgacttacctgataaacaatgtagcacttgtggt
gctgaacttattaaagaagggcaagacataccatttgaaacattcttaggatttaaggga
gataaagttcccgatattgacttgaactttagtggtgagtaccaaccaaacgctcataac
tatactaaagtgcttttcggggaagacaaggttttccgtgcaggaacaataggtacagtt
gccgaaaaaacggcgtttggatatgttaaaggctatttaaatgaccaaggtatccataaa
cgtggtgcggaaatcgatcgtctggttaaaggatgtacaggtgtaaaacgtacaacagga
caacatccaggtgggattatagtagttcctgattacatggatatttatgatttcaccccg
atacaatatcctgcagatgatcaaagcgcttcttggatgacaacgcatttcgacttccat
tccatccatgataatgttttaaaacttgatatattaggacatgatgatcctacaatgatt
cgtatgttacaagatttatctggtatagatcctaagaccattccagtagatgataaagag
acaatgcaaatctttagtagtcctgaatcattaggtgtaactgaagaggagatactttgt
aagactggaacattcggtgtacctgaatttggtacaggatttgttcgacaaatgttagaa
gatacgaaaccaacaactttttcagaacttgtacaaatatcaggactatctcatggtact
gatgtttggttaggtaatgcacaagaattgattcgttcaggtatttgtgatttatcaagc
gttataggttgtcgtgatgatatcatggtttatttaatgtatgcaggattagaaccgtca
atggcctttaaaacaatggaatcagtgcgtaaaggtaaaggtctaactgaagaaatgata
gacgctatgaaagagaataatgtaccagattggtatttagattcttgtctgaaaattaag
tacatgttccctaaagctcacgcagccgcatatgtactaatggcagtgagaattgcatat
ttcaaagtacatcatccgctttattattatgcatcttatttcacaattcgtgcatcagac
tttgatttaattactatgattaaagacaaagaaagcataaagaatacagtcaaagatatg
tattcaagatacatggacctcggtaaaaaagaaaaagatgttcttactgtcttagaaatt
atgaatgaaatggctcaccgcggattccgtatgcaaccaatcagtctagagaaaagtcag
gcatttgactttattattgaaggagatactttaattcctccatttatttctgtacctgga
cttggagagaatgttgctaaacgtattgttgaagcgcgagaagatggtccattcctatct
aaagaagatttaaataaaaaggctggattatctcaaaaaataattgagtatcttgatgat
ttaggttctttacctaatcttccagataaggcacaattgtctatttttgatatgtaa
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integrated database retrieval system