Staphylococcus haemolyticus JCSC1435: SH1863
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Entry
SH1863 CDS
T00250
Name
(GenBank) unnamed protein product; similar to unknown protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sha
Staphylococcus haemolyticus JCSC1435
Pathway
sha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH1863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sha03019
]
SH1863
Messenger RNA biogenesis [BR:
sha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SH1863
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BAE05172
UniProt:
Q4L5A3
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All DBs
Position
1911088..1912767
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AA seq
559 aa
AA seq
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MKQLHANEVGVYALGGLGEVGKNTYAIEYKNEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
EQNQDKIVGLFITHGHEDHIGGVPYLLKQINVPIYGGPLALGLIRNKLDEHNLLRNASLN
EITEDSVIKSKHFEISFYLTTHSIPEAYGVIIDTPEGKIVHTGDFKFDFTPVGEPANIAK
MAELGKEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFVEPNKINNIPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPDDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGQTGVDCGVKEENVFIFDIGD
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNANPNIQWHQIKSSIIETLQPYLY
DKTARRPMILPVIMKVNED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaattacatgctaacgaagtaggtgtatatgctttaggtggcttaggtgaagtc
ggtaaaaacacttatgctatcgaatataaaaatgaaattgttatcattgatgccggaata
aaattccctgatgataatttattagggattgattatgttattcctgattacacttacctc
gaacaaaatcaagacaaaattgtcggtctattcattacacatggacatgaagaccatata
ggtggtgtgccctacctattaaaacaaattaatgtacctatctatggcggtccattagca
ttaggattaattcgcaacaagttagacgaacacaatttattacgtaacgcttcactaaat
gagattacagaagatagtgttattaagtctaaacactttgaaatatcattttacttaact
acacatagtattcctgaagcttatggtgtaataattgatacacctgaaggtaaaattgtt
catacaggtgactttaaatttgatttcactcctgtaggcgaacctgcgaatattgctaaa
atggcagaattgggtaaagaaggcgtattatgtctattatctgactcaacaaatgcatta
gtacctgatttcacattaagtgaacgtgaagtaggtcaaaacgtagataaaattttccgt
aactgtaaaggacgtatcatatttgctacatttgcttctaacatttaccgtgtacaacaa
gcggttgaggctgctattaaatataatcgtaaaatagtaacatttggtcgttccatggaa
aataatattaaaatcggtatggaattaggctatattaaagcaccgccagaaacttttgtt
gaaccaaataagattaacaacattccaaaacatgaattactaattttatgtacaggatct
caaggtgaaccgatggcggctttatcacgaattgcaaatggaactcataaacaaattaaa
attatacctgatgatactgttgtatttagttcatcacctatcccagggaacactaaaagt
atcaatcgcacgattaatgcattatacaaagctggtgctgatgttatccatagtaaaatt
tcaaatatccatacatcaggtcacggttctcaaggcgatcaacaacttatgcttcgcttg
attcaaccgaaatatttcttaccaattcacggtgaatatcgtatgcttaaagcgcatgga
caaacgggtgtggactgtggtgttaaagaagagaacgtctttatctttgatatcggtgat
gtactcgcattgacacatgactctgctcgtaaagccggtcgcataccttctggtaatgtg
ttagtagatggtagtggaattggtgatataggtaacgttgttattcgtgatcgtaaatta
ttatctgaagaaggattagtcattgtagtggttagtattgatttcaacactaataaatta
ctttcaggtccagatatcatttctcgtggttttgtgtacatgcgtgaatcaggtcaatta
atttatgacgctcaacgcaaaattaaaaccgacgtaatttctaaattaaatgctaatcca
aatattcaatggcatcaaattaaatcttcaatcattgagacattacaaccttatctatac
gataaaactgctcgtcgcccaatgattttacctgtaattatgaaagtaaacgaagattaa
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