Strigops habroptila (Kakapo): 115601246
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Entry
115601246 CDS
T08851
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115601246 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115601246 (MTREX)
03041 Spliceosome [BR:
shab03041
]
115601246 (MTREX)
03009 Ribosome biogenesis [BR:
shab03009
]
115601246 (MTREX)
03016 Transfer RNA biogenesis [BR:
shab03016
]
115601246 (MTREX)
Enzymes [BR:
shab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115601246 (MTREX)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115601246 (MTREX)
Spliceosome [BR:
shab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115601246 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
115601246 (MTREX)
Ribosome biogenesis [BR:
shab03009
]
Eukaryotic type
Pre-60S particles
Helicases
115601246 (MTREX)
Transfer RNA biogenesis [BR:
shab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115601246 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
115601246
NCBI-ProteinID:
XP_030326829
UniProt:
A0A672TN88
LinkDB
All DBs
Position
Z:complement(83183601..83228227)
Genome browser
AA seq
1031 aa
AA seq
DB search
MADAFGDELFSVFEQPAAASAARKSKASVIDGVRTPGKRSEAKSSAVATAKPKRKAEVNH
TENAVLGKKPKLEDGLEDVNLADVMPRVKVQAVETVEGCTHEVALPANEEFTGLKPRTGK
AAKEYPFILDAFQREAILCVDNKQSVLVSAHTSAGKTVCAEYAIALALRDKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDY
RPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGP
SNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCL
SDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINM
PARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNKLEGL
YNKIVIPNEENVVIYYKIRQQLAKMSREIEEYVHKPKYCLPFLQPGRLVKVKNEDNDFGW
GVVVNFSKKSNVKPNSGELDSLYVVEVLLYCSKDSLKNSATESAKPVSLDEKGEMQVVPI
LVHLVAAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLK
KIIQKVEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAVDIKAAKRELKKARTVLQMDEL
KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGIFNDLSPEQTAALLSC
FVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVH
TWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagatgagctcttcagcgtgttcgagcagccggccgccgcgtct
gccgccaggaagagcaaagcgtccgtcattgatggcgtcaggacaccgggaaaacgatca
gaagcaaagtcctcagcagttgcaacagcaaagccaaaaaggaaagctgaggtcaatcat
accgaaaatgctgttttgggaaagaagccaaaactggaagatggattagaagatgtcaat
ctggcagacgtgatgcctcgggtaaaggtacaagctgtggaaactgttgaaggttgtaca
catgaggttgcacttccagcaaatgaagagttcacaggtctgaagccgagaactgggaaa
gctgcaaaagaatatccgtttattcttgatgcttttcaaagggaggctattctttgtgtg
gataataagcagtctgtgttagtgtcagctcatacatcagctggtaaaactgtttgtgca
gagtatgcaattgccctggctttgagggataaacagcgtgtaatatttacaagtccaatt
aaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggatgttggtttg
atgactggggatgtcaccattaatcctacagcttcttgtttggtaatgacaactgagatt
ttgagaagcatgctctacagaggttctgaggttatgcgggaagttgcatgggttattttt
gatgaaatccactacatgagagattcggaacgtggtgttgtttgggaagagacaattatt
ttgcttcctgacaatgttcattatgtcttcctttccgcaactattccaaatgctcgccag
tttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttacactgactat
cggcccactccactgcaacattatatattcccagcaggaggagatggactccatctggtg
gttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaagtgcttaga
gatgcaggagacttagcaaaaggagaccagaaaggcaggaaaggaggaacgaaaggtcct
tcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaaccagtgattatt
ttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaagttagatttc
aatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcgattgattgtcta
tcagatgaagacaaaaagcttcctcaggttgagcatgtacttccacttctgaagcgagga
attggtatccatcacggtggtctgcttcctattttaaaagaaaccatagaaattcttttc
tctgagggcctaataaaggccttatttgccacagagacttttgctatgggaattaatatg
ccagccaggactgtgctatttacgagcgccagcaaatttgatgggaaagatttccgatgg
atatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggtatggatgac
agaggaatcgtaattcttatggtggatgaaaaaatgagtccaacaattggcaagcagctc
ttgaagggttcagctgatcctttaaacagtgcattccacctgacatacaacatggtattg
aacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatccttctatcag
ttccaacattacagaactattccagaaatagtagaaagagtgaataagttggaaggacta
tacaacaaaatagtcattcccaatgaagaaaatgtggtcatatactacaaaatccgacag
cagcttgcaaaaatgagtagagagattgaagagtatgttcacaaaccaaagtactgcctg
ccgtttctacagccaggaagactggtaaaggtgaagaacgaagataatgactttggatgg
ggagtggttgttaatttctctaagaaatcgaatgttaagccaaattctggtgaattggac
tcgttatatgtagttgaagtgctactgtactgcagcaaagacagtttgaaaaattctgct
actgagtccgcaaagccagtcagtcttgatgagaaaggagagatgcaggttgttcctatt
ttggtacatcttgtcgcagctatcagcagtgtccgactttacataccgaaagacctgcgg
cctgttgacaacagacaaagtgtgctaaaatctatacaagaagtacagaagcgatttccc
gatggagtaccattactagaccctattgatgacatgggcatcaaagatcaaggactgaaa
aaaataatccaaaaagtagaggcatttgagcataggatgtattcacatcctcttcacaat
gatcccaacttggaaaccatatacaaactttgtgaaaaaaaagcacagattgctgtagat
atcaaagcagcaaagcgagaactgaaaaaagctagaactgtcttgcaaatggatgaactc
aagtgccgcaagcgtgttttgagaagactggggtttgccacgtcttcagatgttattgag
atgaaagggcgggttgcttgtgaaatcagcagtgctgatgaactcctcctgacagagatg
atgttcaatggtatcttcaacgacttatctccagaacagacagctgcactactaagctgt
tttgtatttcaagagaattccagtgagatgccaaagctgacagagcagttggcaggacca
cttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaagcaaaactg
gaaattgatgaagaaaattacttgaattccttcagacccaacctcatggatgttgtccat
acatgggcaaatggtgctaactttgctcacatctgcaaaatgactgatgtctttgaaggt
agcataattcgttgcatgagaaggttggaagaattgctgcggcagatgtgccaagctgca
aaagccattggaaacacagagctggagaacaagtttgcagaggggattacaaaaatcaag
agagatattgtctttgctgcaagcctttacctgtaa
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integrated database retrieval system
