Strigops habroptila (Kakapo): 115601338
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Entry
115601338 CDS
T08851
Symbol
NCBP1
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03013
Nucleocytoplasmic transport
shab03015
mRNA surveillance pathway
shab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115601338 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
115601338 (NCBP1)
03015 mRNA surveillance pathway
115601338 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115601338 (NCBP1)
03041 Spliceosome [BR:
shab03041
]
115601338 (NCBP1)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
115601338 (NCBP1)
Spliceosome [BR:
shab03041
]
Common components
Common spliceosomal components
Cap binding complex
115601338 (NCBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Importin_rep_6
Vfa1
Motif
Other DBs
NCBI-GeneID:
115601338
NCBI-ProteinID:
XP_030327087
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All DBs
Position
Z:42364269..42396819
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AA seq
794 aa
AA seq
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MSRRRHSDDSDGQPHKRRRTSEPSEIEERLESLICRVGEKSNSSLESNLEGLAGVLEADL
PNYKSKILRILCTVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKECLKVNMY
NQAVHLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRCDWYVFAFLSSLPWVG
KELYEKKDAEVDRLLSQTESYLKRRQKIHVPMLQVWTADKPHPQEEYLDCLWSQIQKLKK
DRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGP
VMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLLSYPGNNKIPLNYHIVEVIFAELFQ
LPSPPHIEVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHL
SNFQFRWSWEDWSDCLTQDLEKPKPKFVREVLEKCMRLSYHQRIIDIVPASFSVLSPANP
VCIYKYGDESNRSLPGYTVALCLTIAIKNKASNDEIFSILKDVPNPNQDDDDDEGFSFNP
LKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVVYEVWKNHPQMI
AVLVDKMIRTQIVDCAAVANWIFSSELAHDFTRFYIWEILHSTIRKMNKHVLKIHKELEE
TKARLARQHKRRDSDDDDDDDDRSSDREDGPLEEQIERLQEKVESAQSEQKNLFLVIFQR
FIMLLTEHLVRCETGGIDVFTPWYRSCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDH
HILAVFQQFCALQA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcggcggcacagcgatgatagcgatgggcagccgcacaaaaggcggaggacg
tctgagccatcggagatcgaggagaggctcgagtcactcatctgcagggtcggggagaag
agtaattcatctttggagagcaacttggagggtctcgctggtgttttggaagctgatctg
ccaaattacaaaagcaagatactaagaatactatgtactgtcgcacgtctgttaccagaa
aagcttactgtttacacgacactggttgggttgctgaatgccaggaactacaattttggt
ggagagtttgtagaagccatgattcgtcagcttaaagaatgcctgaaagtcaatatgtat
aaccaagctgtgcatttagttcgttttctatctgatcttgtgaactgtcacgtaatagct
gcgccttcaatggtagctatgtttgagaactttgtgagtgtgacacaggaggaagatgtg
ccccaagtacgatgtgactggtacgtatttgcatttctgtcttctttgccgtgggtggga
aaggagttatatgagaaaaaggacgctgaagtggatcgtctcttgtctcagactgaaagc
tatttgaaacgccggcagaagattcatgtacccatgctacaagtttggactgctgataag
ccacatccacaagaggagtatttagactgcctttggtctcagatccagaagttgaaaaaa
gaccgctggcaagaacgacacattctgaggccctatttggcttttgacagtattctttgt
gaagcgctgcagcacaatctgcctccattcacccctccgcctcacaccgaagattcagtg
taccccatgccaagggttatttttagaatgtttgactacacggatgaccccgagggcccc
gtcatgccaggcagccactctgttgaacgatttgtgatagaagagaaccttcactgcatc
atcaaatcccactggaaagagagaaagacttgtgctgcacagctgttgagctatccaggc
aataacaagatccccttgaactaccacatcgtagaggtaatatttgctgagttgtttcaa
cttccatctccaccgcacattgaagtcatgtacacaacgctcctgattgaactctgcaag
cttcagcccggctctttgccacaagttcttgcacaagccaccgaaatgctgtacatgcgt
ttggatacgatgaatacaacatgtgtggacagatttattaactggttttctcaccacttg
agcaactttcagttccgttggagctgggaagattggtcagattgtcttactcaggacctt
gagaagcccaaacccaaatttgtgagagaggttttggaaaaatgcatgcgactctcctac
caccagcgaataatagacattgttcctgcaagtttttccgtcctcagtcctgctaatcca
gtgtgcatttacaaatacggagatgaaagtaataggtctcttcctggatatactgtggcg
ctctgtctaacaattgccattaaaaataaggccagtaatgatgaaatcttcagcatttta
aaagatgtgcctaatccaaaccaggatgatgatgatgatgaaggattttccttcaaccct
ctgaaaatagaagtgtttgttcagactctgctccatctagctgcaaagtctttcagccat
tccttcagtgccctggcaaagtttcatgaagtcttcaaaacgctcgctgaaagtgatgag
ggcaaactccatgttctgagggttgtatatgaggtttggaagaatcatccacagatgatt
gctgtgcttgtggacaagatgattcggacacaaattgttgactgtgctgcagtagcaaac
tggatcttctcttcggagcttgcacatgatttcactaggttttatatctgggagatcttg
cattccacaattcgtaagatgaataagcacgttctgaagattcacaaagaactggaggag
actaaggcaagattggccaggcagcacaaaagacgagacagtgacgatgacgatgacgat
gatgaccgcagcagcgatcgggaggatgggccactggaagagcagatagagcgcctgcag
gaaaaagtcgagtcagcccagagcgagcagaagaatctcttccttgttatcttccagcgt
ttcattatgctgttaactgagcacttggtgcgctgcgagacgggtggaattgacgtgttc
acaccctggtacaggagttgtatagagaggttgcaacagatcttcctacagcatcaccag
atcatccagcaatacatggttaccctagagaacctcctgtttacagctgaactggaccac
catatactggccgtgtttcagcagttctgtgctctgcaggcttga
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