Strigops habroptila (Kakapo): 115601410
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Entry
115601410 CDS
T08851
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115601410 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115601410 (EDC4)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115601410 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
115601410 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
115601410
NCBI-ProteinID:
XP_030327280
UniProt:
A0A672TKK4
LinkDB
All DBs
Position
Z:21266207..21304611
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AA seq
1403 aa
AA seq
DB search
MASSSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPIVAGDVPSL
AKPVHRTISLGALQEKQVICLSGDDSSTCIVITAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNAYLAYAIRAASNGSAMVRVLSISAAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTSRRIIWCPFI
PDDNEESGEEGSQILALLHEDRAEVWDLDIIRTNNSSWPVEVPNIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPPE
EESDNLSVEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPCHGSQ
EEFAFPDHMADLSTEELGSEKGSVHGSQPDLRHIADLPVPADFLSLSNDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSASVTDASMPRPSEDLAVSPKMQLDTSLTLSS
SSSGLQTSPRSHSVLIPGLSDKLTPKAPLPVPPGNPSLALELQEVEPLVMPQASPTRERS
PDVISSASTVMSQDIPEIASETLQRSFAAAPSGLPAEVLEPSHHSDSMASAASALHLLSP
GTRHNSEHSHHSLDMPPVEMDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
TMADSLRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
TQRLPVKDWKAKTSPQASPKLKRKGKKDDRDVNQSPRSSNNLMTPEFQEEVMCILRRQQQ
ELSRLRQNQMELVQRLMDHINTVQSNLMGHIERLISSQQEQSQRRLDRLLTEVQQRNGQL
QEHLSQQLSQSLSTVVCNRLERTIREEMKKTVPQCISKSMDTIAGQLNNTIAAKLTAVEG
TLKENVAKLVKSKNLTDAVVRTMTDTLQGQIQSSYRETFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYVQQFEAHLKNKNVREQEARDLLLNQLRQLASTFQSTTEQLASSITASVHAE
VEHQLRIFVGNMQESTLAQVQRVIKEEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHL
DFQSQQTHILQLLQQGRLNQAFQQALTAADLNLVLYVCETVDTEQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
TLSRPARRLTMILQGLLALEQIQ
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctccagcatcgacattgaggacgcgacccagcacctgcgggacatcctc
aagctggaccgaccgggaggttcggtgaatgagaaccagagaccgtcaaattcatataac
ggagacctgaatggactgctggtgcctgaccccatcgtggctggagatgtaccttctctg
gctaagccagtgcatcgcaccatttctctgggagccctgcaggagaaacaagtcatctgc
ctttctggtgatgacagttccacttgcatagtgataacagcaaaagatgtggagatagta
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaagatacag
cctgttgctagatatgactgggagcagaagtactattatggcaatctgatagcagtttca
aacgcttacctggcttatgccattagagctgctagcaatggctccgctatggtgcgggtc
ttgagcatcagcgcagctgagaggaccttgctgaaaggattcacgggtggtgtggcagat
ttggcttttgctcatctcaactccaaccagctggcgtgcctggatgaggctggcaacctt
tttgtctggcgcctggccatggataaagaaaaaatacaagaggagatcctggttaacatc
aagcggcctgacaataccccattgaacacctctcgaagaatcatctggtgccctttcatc
cctgatgataacgaggagagtggtgaagagggaagtcagatattggcgttgctgcatgag
gacagagcagaggtgtgggatttggacattatccggacaaacaacagctcctggccagtg
gaagtgcctaatatcaaagaaggcttcatcgtagtgaaaggccacagcacgtgcctgagt
gagggagcactttctccagatggaactgtgctggccacagcaagccatgatggttttgtc
aaattctggcagatatatatcgagggtcaggacgagccaaggtgtcttcatgagtggaaa
ccccatgatggtaggcctctttcctgcctgctcttttgtgacaatcacaaaaaacaagac
ccagaggttcccttctggagatttcttatcacaggagcagatcagaacagagaactgaag
atgtggtgcactgtgtcttggacctgtctgcagactgtccgcttttctcctgacatcttc
agctccatgagtattcttcccagcctgaaagtctgcctggacctctcagctgaatatctg
atactgagtgatgtgcaaagaaaagttttgtatgtgatggagctgatgcagaaccaagag
gagggcaaagcttacttcagctccatctcagagttcctccttacccacccagtcctaagc
tttggcatccaggcagtcagccgctgtcggttaaggcacactgaggtgctcccaccagaa
gaggaaagtgacaacttgagtgtagaaggtgctcagggagctggggctgttgaatcggca
gcaggcgtgctgataaaactcttctgtgtgcacaccaaggccctacaggatgtgcagatt
agatttcagcctcttcatagccctgacacgagtgcatccatgccttgccatggctctcaa
gaagaatttgcctttccagaccacatggctgatctaagcacagaagagctgggatcagaa
aaaggatcagtgcatggctctcaaccagacctgcggcacattgctgatctgcctgtgcca
gcagacttcctttctctctcaaatgatgccaaacctaagctgatgactccagatgcattc
atgacaccgagtacatctcttcaacagattgctgtatctccaggcagcagtgtcagttcc
ctgactgcagtcacagccatgagtagcgcttctgtcacagatgcctctatgcccaggcca
tcggaagacttggctgtgagccccaagatgcagctggacaccagcctcacactgagtagc
agtagcagcggtctccagactagtcctaggagccattcagttcttatcccaggcctttct
gacaagctgacaccaaaggcgcctcttccagtcccaccgggaaacccttctctagcactg
gaactgcaggaggtggagcccttggtgatgccccaggcttctcccacccgtgagcgctca
ccagacgtcatttcctctgcttccacagtcatgtcccaggatattcctgagattgcttcc
gagaccttgcaacgcagctttgcggcagctccctctgggcttcctgcagaggtgctggag
cccagccatcactcagacagtatggcatccgctgcctcagccttgcatttgctgtctcca
ggcacccggcacaattccgagcacagccaccactcgttggacatgcctccagtggagatg
gacaggctgaatgctccatcattactggagactgctttaactcaggaaaatgcatcttct
gacagcgttgtgagtcagccatggccagcagctcctgacataaccagagaaaccaggaac
accatggcagacagcctgagggatgaggttgaagaaaagcacaagagctcttcctatcat
cgacacagctaccacctgctgcagcatgacagccaggatgctagtgcagaacaaagtgac
catgatgatgaagttgcaagcttggcttctacatcaggtggatttggtgccaaagcatct
acacagaggctgcctgtgaaggactggaaagccaagacatccccacaagcttctccaaag
ctaaagcggaagggcaagaaagatgacagggatgtgaaccagtcaccaagatcatctaac
aacctgatgacgccagagttccaggaggaggtgatgtgcatattgaggaggcaacagcag
gagctttctcggctgcgtcagaaccagatggagctggtgcaaagactcatggatcacatt
aatactgttcagagcaaccttatgggccacatcgagaggctgattagctcccagcaggag
cagagccagagaagactagaccgactgctgacggaagtacagcagcgcaatgggcagctc
caggagcatctgtctcagcagctctctcaatccctttccactgtggtgtgtaaccgtctg
gagaggaccattcgtgaggagatgaagaagactgtacctcagtgcatttccaagagcatg
gacactattgctggccagctaaataacactattgctgccaagctcactgccgttgagggg
acactgaaagaaaatgtggccaagctagtgaaatcaaagaaccttacagatgctgttgtg
aggactatgactgataccctgcaggggcaaatccagtcatcttacagggaaacatttcag
agtgtcgtgttgccagcctttgagaagagctgccagtccatgttccagcagattaatgat
accttcaagcagggtacgcaggaatatgttcagcagtttgaggctcacttgaagaacaag
aatgtacgagaacaggaggcccgggacctgctgctgaatcaacttcgacagctcgccagc
accttccagagcaccacggagcagctggcttcctctatcacagccagcgtccatgctgag
gtggagcatcagctgcgtatctttgtgggcaacatgcaggagtctactttggcccaagta
cagcgagtcattaaagaagaagtgagcctggctatgaaggagcagcaagcagcagtcacc
tcgagcatcgtccaggcaatgcgctcagcggctggcactccaatcccttccactcacttg
gatttccagtctcagcaaactcacatcctccagctgctccagcagggacgcctcaaccaa
gccttccagcaggctctaacagcagctgatctcaaccttgttctgtacgtctgtgagact
gtggatactgagcaagtatttgggcagcatccgtgcccactgtcccagcctgtgctgctc
tctctcattcagcagctctcctctgatttgggtactcgtacggaactgaagttgaattac
ttggaggaggcggtgatgcacctggaccacagtgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtacggcagaagctcttccagttcctgcaggtggagccccacaac
acgctgagcaggcctgcccgtcgcctcacgatgatactccagggcctgctcgctctggag
cagatccagtag
DBGET
integrated database retrieval system
