Strigops habroptila (Kakapo): 115601872
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Entry
115601872 CDS
T08851
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03030
DNA replication
shab03420
Nucleotide excision repair
shab03430
Mismatch repair
shab03440
Homologous recombination
shab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115601872 (RPA1)
03420 Nucleotide excision repair
115601872 (RPA1)
03430 Mismatch repair
115601872 (RPA1)
03440 Homologous recombination
115601872 (RPA1)
03460 Fanconi anemia pathway
115601872 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shab03000
]
115601872 (RPA1)
03032 DNA replication proteins [BR:
shab03032
]
115601872 (RPA1)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115601872 (RPA1)
Transcription factors [BR:
shab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115601872 (RPA1)
DNA replication proteins [BR:
shab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115601872 (RPA1)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115601872 (RPA1)
MMR (mismatch excision repair)
115601872 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
115601872 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
OB_MEIOB_N
Motif
Other DBs
NCBI-GeneID:
115601872
NCBI-ProteinID:
XP_030328217
UniProt:
A0A672TXY5
LinkDB
All DBs
Position
13
Genome browser
AA seq
614 aa
AA seq
DB search
MSVRLSEGAIAAIMQGENVSKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSAQCICQVNRFIVNSLKDGRRVVILMDLNVLKTADKVGGNIGNPVPYNEG
QGQQRSSAPAANPAPSKPQQPNGNLSVAGPAAPKYHPPSNQFGKASALSSVKTPGGSQAK
VVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQAD
KFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFEFV
SISDLENTPKDSIVDVIGICKSYEDVTKITVKSNNREVSKRNVHLMDTSGKLVTATLWGN
EAEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVVNPDTPEAFKLRGWFDSEGQLLE
CTSISDVRGGPAPGANTNWKTLYEAKAENLGQGDKADYFSCVGTVVHLRKENCMYQACPS
QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMMLLVTIADCLEYQWVTCFQEAAEFILGQN
AAFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATALDVKPVNYREYS
KRLIASIRRNAQLW
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcggctgagcgagggcgccatcgcggccataatgcagggggagaacgtctcc
aagcctgtgctacaagtcattaatacacgggctattgctacaggaaacgggccaccgcgt
taccgagtgctgatgagtgatggggtgaacacactctcctcattcatgttggcaacacag
ctgaactctctggtggaagaggaacgcttatcagcacaatgtatttgccaggttaacagg
ttcattgtcaacagcctgaaagatggaaggagagtggttatcctgatggatttaaatgtt
ctgaaaactgctgataaggttggtggcaatattggcaacccagtgccgtataatgaaggg
caagggcagcaacgttcttcagctccagcggcaaacccagcacccagcaaaccacagcaa
ccaaatggcaatttgtcagtggcaggtcctgctgctccaaagtaccaccctccctcaaac
cagtttggtaaagcaagtgctctcagctcagtgaagacaccgggaggatcacaggccaaa
gtagtgccgattgccagcctgaacccgtaccaatcgaagtggaccatctgtgctcgtgtt
acccaaaaaggccagatccgcacttggagcaactcccgtggtgaaggaaagctcttttct
atagagctagttgatgaaagcggtgagattagagctactgcattcaatgatcaagcagac
aagttctttccgctcattgaattgaacaaggtatattattttaccaaaggcaatttgaag
actgctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgag
acttcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgagtttgta
tccatctctgacttggagaacacacccaaagactcaattgttgatgtaattggaatttgt
aagagctatgaagatgtcactaaaattacagtgaaatctaacaatagggaggtatcaaag
aggaacgtgcatctgatggatacatcagggaagctggtgacagctacactatggggaaac
gaggctgaacagtttgatggttctagacaacctgtgatagccatcaaaggagccagagtc
tctgattttggtggtagaagcctgtctgtcctgtcctcaagtacagttgtcgtcaaccct
gataccccagaggcttttaagctccgaggatggttcgactcggaggggcagcttctggaa
tgtacttcaatctctgatgtgaggggtgggccagcacctggagcaaataccaattggaaa
actttgtatgaagccaaagctgagaacttgggccaaggagataaggcggattattttagc
tgtgtgggcacagtcgtacatctgcgcaaggagaactgtatgtaccaggcatgtccctct
caggattgcaataagaaagtgatagaccaacaaaatggactatatcgttgtgaaaagtgt
gacagtgagttccccaacttcaagtaccgcatgatgctcctggtgaccattgcagactgt
ctggagtatcagtgggtgacttgtttccaagaggcagcagaattcattcttgggcaaaat
gcagctttcctgggagaactgaaggaaaagaacgagcaggcctttgaagaagtgttccaa
aatgcaaacttcaacacgtatgagttcaggatccgagtgaaactggagacttacaatgat
gagtctcgtatcaaagctacagcactggatgtcaaacctgtgaactacagagagtacagc
aagagactgatcgccagcatcaggagaaatgctcagctgtggtga
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