Strigops habroptila (Kakapo): 115602980
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Entry
115602980 CDS
T08851
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03008
Ribosome biogenesis in eukaryotes
shab03013
Nucleocytoplasmic transport
shab03015
mRNA surveillance pathway
shab05164
Influenza A
shab05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115602980 (NXF1)
03015 mRNA surveillance pathway
115602980 (NXF1)
03008 Ribosome biogenesis in eukaryotes
115602980 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
115602980 (NXF1)
05168 Herpes simplex virus 1 infection
115602980 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115602980 (NXF1)
03009 Ribosome biogenesis [BR:
shab03009
]
115602980 (NXF1)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115602980 (NXF1)
mRNA cycle factors
Stress granule specific factors
115602980 (NXF1)
Ribosome biogenesis [BR:
shab03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
115602980 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
UBA_8
Motif
Other DBs
NCBI-GeneID:
115602980
NCBI-ProteinID:
XP_030330321
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MAEEAKGGFSEHDDRVGGRIFSGRRKKGRGPFRGKMYSEMNPRARSRGGPGGRPRPDDDD
GDVPMSDAHDGPRTRYLPYGPRPNRTANIHITVRRDLPAPERSSGSSREGGRRNWFKITI
PYGKKYDKSWLLSSIQNLCSVPFTPVEFHYDHNRAQFYVEDATTASALKQVSRKITDRDN
YKVVIVINSSAPPQSLQNELKPEEVEQLKLCMSKRYDGAQRALDLKSLRVDPDLVAQSIN
VVLNQRSCMLVVLRIIEDNIPELQSLNLSSNKLYHLDDLSELAQKAAGLKILDLSRNELK
SERELDKVKGLKLEELWLDGNPLCDAFRDQSTYISSVRERFPKLLRLDGHELPPPIAFDV
EAPTTLPPCKGSYFGSDDLKVLVLRFLQQYYSIYDSSDRQGLLDAYHDGACCSLSIPFGP
QNPPRSSLNEYFKDSRNVKKLKDPTMRFKLLKHTRLNVVAFLNELPKTQHDINSFMVDVC
AQTNTLLCFAVHGIFKEVDGKSRDSVRAFTRMFIAVPAGNTGLCIVNDELFVRNATTEEL
RKAFLLPAPTPSSSPVPTLAAEQQEMLAAFAMQSGMNLEWSQKCLQDNDWDYGRAGQVFT
QLKLEGKIPEVAFLK
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaggccaagggcgggttcagcgagcacgatgaccgggtgggcgggcgcatc
ttctcgggccggcggaagaagggccggggcccgttccgggggaagatgtacagtgagatg
aacccgcgggcccggagccgcggcggccccggggggcgcccgcgccccgacgacgacgac
ggcgacgtccccatgagcgatgcgcacgacgggccccgcacccgctacttgccctatggg
ccccggcccaaccgcacggccaacatccacatcacggtccggagggatctgcccgcgccg
gagcggagcagcggatccagccgggaaggggggcgcaggaactggttcaagatcacgatc
ccctatggcaagaagtacgacaagtcctggctgctgagctccatccagaacctctgcagc
gtccccttcacccccgttgagttccactacgaccacaaccgggctcagttctacgtggag
gacgccaccaccgccagcgccctcaagcaggtctcccgcaagatcaccgacagggacaac
tacaaggtggtgattgtgatcaactcctcggcgccgccccagtccctgcagaacgagctg
aagccggaggaggtcgagcagctgaagctctgcatgagcaagagatacgacggggcccag
cgagctctggacctcaagagcctccgcgtggacccagacctggtggcacagagcatcaac
gtggtgctgaaccagcgcagctgcatgctggtggtgctgcgcatcatcgaggacaacatc
cccgagctgcagtcgctcaacctgagcagcaacaagctctatcacctggacgacctgtcg
gagctggcgcagaaagcggccgggctcaagatcctcgatctctctcgcaacgagctgaag
tccgagcgggagctggacaaggtgaaggggctgaagctggaggagctgtggctggacggg
aaccccctgtgcgacgccttccgggaccagtccacctacatcagctccgtcagagagagg
ttcccgaagctgctgcggctggacgggcacgagctgcctccacccatcgctttcgacgtg
gaggcaccaacgacgctgccaccgtgcaagggcagctacttcggctctgatgacctgaag
gttttggtgctgaggttcctccagcagtattattccatctacgactccagcgacaggcag
gggctgctggacgcctaccacgatggggcctgctgctccctcagcatcccctttggcccc
caaaacccccccaggagcagcttgaacgagtacttcaaggacagcaggaacgtgaagaag
ctgaaggaccccaccatgcgctttaagctgctcaagcacacgcgcctcaacgtggtggct
ttcctcaacgagctgcccaagacccagcacgacatcaactccttcatggtggacgtctgc
gcccagacgaacacgctgctctgcttcgccgtccatggcatcttcaaggaagtggacggc
aaatcccgggactcggtacgagccttcacgcggatgttcatcgccgtgcccgccggcaac
accgggctgtgcatcgtgaacgacgagctgttcgtgcgcaacgccacgacggaggagctg
cgcaaagccttcctgctgcccgcgcccaccccctcgtccagccccgtgcccacgctggcg
gccgagcagcaggagatgctggcggccttcgccatgcagtccggcatgaacctcgagtgg
tcccagaagtgcctgcaggacaacgactgggactacggccgcgccgggcaggtcttcacc
cagctcaagctggaagggaagatcccggaggtggcgttcctcaaatga
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