Strigops habroptila (Kakapo): 115603305
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Entry
115603305 CDS
T08851
Symbol
CHD8
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
115603305 (CHD8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shab03036
]
115603305 (CHD8)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115603305 (CHD8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
MUN
Myb_DNA-bind_7
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
115603305
NCBI-ProteinID:
XP_030330918
LinkDB
All DBs
Position
Unknown
AA seq
2161 aa
AA seq
DB search
MADPIMDLFDDPNLFALDPLADDAFGPAPPPPPQPMADEALATPPPPIGPPPEDPLAPPP
DPPEQELIGQLNPFMGVTGAAMTAPPSCPNPPKLLLLKPHVAGHAPSDVTSPAPDVTGPA
PSSTNGAKVTLAKVLAGAAPLRPGISIVTNAAAAAGGGSPGGGASVATPPPAVHRLVQAA
RPVKQLVLQPVKAGGSGGKGGGATAAAAANQGESKRITLVLQQPPGGTVPPGQRHVVLGS
LPGKIVLQGNQLTTLGQAKGSPGQPAKVVTIQLQVQQPPGGGQAGPPQKIQVLQPAAGGQ
GTPVTVSSVPQVVAGAGQRVTVPLKVVLQPQATASPGASGGLSVVKVLSSAELSSLPAAG
RAPSEESRKLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPHVRPEEDTERKR
RRRGERGGAGGGAGGTKEERPRKGKGQSGAKSKGRSKPSTITPVVGKKRKRNASSDTSDA
EVLPAPSPRQEEEPSVQKRRSNRQVKRKKYTEDLDIKITDDEEDEELDVTGPMRPEQPPV
PPAAAPEPEGETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSGQLVESEEFFVKYK
NYSYLHCEWATIDQLEKDKRIHQKLKRFKTKMTQMRHFFHEDEEPFNPDYVEVDRILDES
HSVDKDNGEPVVYYLVKWCSLPYEDSTWELQEDVDEGKIGEFKRIQARNPELKRLPRPQA
GSWQKLELSHEYKNHNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEV
YKGGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDPRGRL
IPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKV
LLTGTPLQNTVEELFSLLHFLEPSQFPSEAEFLKDFGDLKTEEQVQKLQAILKPMMLRRL
KEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLAKGAGHTNMPNLLNTMMELRK
CCNHPYLINGAEEKILAEFRDSCHHHVPVDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKV
LIFSQMVRCLDILEDYLIQKRYLYERLDGRVRGNLRQAAIDRFSRQDSDRFVFLLCTRAG
GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKAS
LKLGLDKAVLQSMSGREGNIAGQIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDID
QILLRRTTTITIESEGKGSTFAKASFVASENRTDIALDDPNFWQKWAKKADLDLDLLNSK
NNLVIDTPRVRKQTRHFSTLRDDDLVEFSDLDSEDEEKPRARRHERHQQHNLQQVYGRTD
CFRVEKHLLVYGWGRWKEILSHGRFKRRLLERDVETICRAILVYCLLHYRGDETIKSFIW
DLISPLENGKTKELQNHSGLSIPVPRGRKGKKVKVQSSLDVHQAEWIRKYNPENLFQDES
YKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLAGAAASDIDIWFPLVEQLEVPTTWW
DAEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGGPDEKAVAAEQRLDIADGVDFEDP
EYKPLLGPSKEVDDETDPLMMLDEEISVVDGDEGAPPAGAAAWPAGAVLTARLRRLVAAF
QRCQQRQREQREQREQRERRRRRSEATCRLKEMARREKQQRWTRREQADFYRVASSFGVE
FDPDVGRFRWGKFRLLARLEKKSDENLTKFFHGFVAMCRQVCRLPPAPGDEPADPSVAVA
PVSPARAARGLRRLSLLRLLREQVLRHPLLLSRLAACPPPGPDLPPWWQRGHHDGELLRG
AARHGLAHPETSILADPDFSFWRYLRAVGDGGVQPQGFSSKGRPSAEEEEVDSEKMSASE
SSAGEEDSEEERGAEAPCGAEEDEDEEDEDEEEDEEEEEEEDEECPPPSGEGGSPGPRPP
PPGPRPFPPPAPPPAPRHLHEWPKDRALIRRLDLVCRAVLSGEWPSEDNPGPPQVPPTPQ
PPLDPPMFPPRPRHEEKEFTVQIKDEEGLKLTFQKHRLVPNGVTRDPAPPKKNSKKMVEL
ELRCLEGLRAAGAAGAPMDKHHHHHHHHPPPTAGPPTSTPASFRLSSPPPLQVWTSPRWW
R
NT seq
6486 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccccatcatggacctcttcgacgaccccaacctcttcgccctcgacccattg
gccgatgacgccttcggccccgccccgccgccccctccgcagccaatggcagacgaggct
ttggccacgccccctcctcctattggcccgccgccggaggaccctttggccccgccccct
gaccccccggagcaggagctgattggtcagctcaaccctttcatgggcgtcacgggggcg
gccatgacggcgccgccatcttgccccaacccccctaagctcctcctcctgaagccccac
gtggctggccacgccccctccgacgtcacaagccccgcccccgacgtcaccggccccgcc
ccttcctccaccaatggggcgaaggtgaccttggccaaggtcttggctggggccgcccca
ttgagacccggcatctccattgtgaccaatgcggcggcggcggcgggggggggaagccca
gggggcggggcttcggtggccacgccccctcctgccgtgcaccgattggtccaggcggcc
cggcccgtcaagcaattggtgctgcagcctgtgaaggcgggagggagcggcgggaaaggg
ggaggagccacggcggcggcggcggccaatcagggcgaatccaagcgcatcaccttggtc
ctccaacaacctcctggtggcaccgtgccccccggccaacgccacgtggtgctgggcagc
ttgcccggcaagatcgtcctccagggcaaccaactgaccaccctggggcaagccaaaggg
agcccaggtcaaccagccaaggtggtcaccatccagctccaggtccaacaacctcctggc
ggtggccaagcggggcccccccagaagatccaggtgctccaacctgccgccggtggccaa
gggacgccggtgaccgtgtcctcagtgccccaggtggtggcaggagctggccagagggtg
acggtgccgctgaaggtggtgctgcagccccaggccacggcgtcgccgggcgcctcgggg
ggcctgtcggtggtgaaggtgctgagcagcgccgaattgtcctccttgccggcggccggc
cgagctccttcggaggagagccgcaagctggagcaccagaagaagcaggagaaggccaac
cgcatcgtggccgaggccatcgccagagcacgggctcggggggagcagaacatcccccgg
gtcctcaacgaggacgagttgccccacgtcaggccagaagaagacacggagcgcaagcgg
cgccgcagaggagaacgtggtggtgctggtggtggtgctggtggcaccaaagaggagaga
ccaaggaaagggaaggggcaaagtggggcgaagagcaaagggaggagcaaacccagcacc
atcacgccggtggtggggaagaagcggaagcggaatgcctcctcggacacctccgatgcc
gaggtcctgcccgccccgtccccgcgccaggaggaggagcccagcgtccagaagcgccgt
tccaaccggcaggtgaagcgcaagaagtacaccgaggacctggacatcaagatcacggat
gatgaagaagatgaagaactcgacgtcaccggccccatgagaccggagcaaccaccggtg
ccaccagcagcagctccagaacccgaaggagaaacgttgccctccatgcagttctttgtg
gagaacccaagcgaggaggacgcggccattgtggacaaggtgttgtccatgagggtggtc
aagaaggagcttccatccggccagttggtggagtccgaagagttcttcgtcaagtacaag
aactactcctatctccattgcgaatgggccaccattgaccaactggagaaggacaagagg
atccaccagaagctcaagcgcttcaagaccaagatgacccagatgcgccacttcttccat
gaggatgaagaacctttcaaccccgactacgtggaggtggatcgcatcttggacgagtcg
cacagcgtggacaaggacaacggggagcccgtggtctattacttggtgaagtggtgctct
ctgccctatgaggacagcacgtgggagctccaggaggacgtggatgaaggcaagatcggg
gagttcaaacgcatccaggcccggaacccggagctcaagcggctgccccgtcctcaggcc
ggctcgtggcagaagctggagttgtcccacgagtacaagaaccacaaccagctgcgggag
tatcaactggaaggggtcaactggctcctcttcaactggtacaaccggcaaaactgcatc
ttggccgatgagatgggcttggggaagaccatccagtccatcgccttcctccaagaggtc
tacaaagggggcatccatggacctttcttggtcatcgcccccttgtccaccatcaccaac
tgggagcgggagttcaacacgtggacggagatgaacaccatcgtctaccacggcagcttg
gcctccaggcagatgatccagcagtacgagatgtactgcaaggaccccaggggccgcctc
atccccggcgcctacaagttcgacgcgctcatcaccacgtttgagatgatcctgtccgac
tgcccggagctgcgcgagatcgagtggcgctgcgtcatcatcgacgaggcccatcgcctc
aagaaccgcaactgcaagctcctcgacagcctcaagcacatggacctggaacacaaggtg
ctgctgacggggacccctctgcagaacacggtggaggagctcttcagcctcttgcacttc
ttggaaccttcccagttcccttcggaagccgaattcctcaaggactttggagacctgaag
accgaggagcaggtccagaagcttcaggccatcttgaagcccatgatgttacggcgcttg
aaggaggacgtggagaagaacctggcgcccaagcaggagaccatcatcgaggtggagttg
accaacatccagaagaagtattacagggccatcttggagaagaacttctccttcttggcc
aaaggagctggccacaccaacatgcccaacctgctcaacaccatgatggagctgcgcaag
tgttgtaaccatccctatctcatcaatggtgccgaggagaagatcttggccgagttccgc
gactcgtgtcaccaccacgtgcccgtggacttccacctccaagccatggtccgctcggcc
ggcaagttggtcctcatcgacaagctcctgcccaagctcaaagccgggggccacaaggtc
ctcatcttctcccagatggtccggtgcctcgatatcttggaggactacctcatccagaag
aggtacctgtacgagcggctggacgggcgcgtgcgcggcaacctgcggcaggcggccatc
gaccgcttcagccggcaggactcggaccgcttcgtcttcctgctgtgcacccgcgccggc
gggctcggcatcaacctcaccgccgccgacacctgcatcatcttcgactccgactggaac
ccccagaacgacctgcaggcccaagcgaggtgccaccgcatcgggcagtcgaaggcggtg
aaggtctatcgcctcatcaccaggaactcctacgagagggagatgttcgacaaggccagc
ctcaagctgggcttggacaaggccgtgctgcagagcatgagcggcagagagggcaacatc
gccgggcagatccaacagttctccaagaaggagatcgaggatcttctgcgcaaaggggct
tatgccgccatcatggaggaggatgacgaaggctccaagttctgtgaagaagacatcgac
cagatcctgctgcgccgaaccaccaccatcaccatcgagagcgaaggcaaagggtccacc
ttcgccaaggcgagcttcgtggcctcggagaaccgcacggacatcgctttggatgacccc
aacttctggcagaagtgggccaagaaagcggacctggacctggatcttctcaatagcaag
aacaacctggtcatcgacacgccgcgggtccggaagcagacgagacacttcagcaccctc
cgagacgacgacctggtggagttctccgacctggacagcgaagatgaggagaaaccaagg
gccaggagacacgagaggcaccagcagcacaacctgcagcaggtctatgggcgaaccgac
tgcttccgcgtggagaaacatctcctggtctatgggtggggccggtggaaggagatcttg
tcccatgggcgcttcaagcggcgcctgctggagcgggacgtggagaccatctgccgcgcc
atcctggtctattgtcttctccattaccgcggcgacgagaccatcaagagcttcatctgg
gacctcatcagccccttggagaacggcaagaccaaggagctccagaaccattcaggtctc
tccatcccggttcctcgcgggcgcaaagggaagaaggtgaaggtccaaagctctttagat
gtccaccaagccgaatggatccgtaagtacaacccggagaacctcttccaagacgagagc
tacaagaagcacctcaagcatcaatgcaacaaggttctgctgagggtccgcatgctctat
tacctgcgccaggaggtcatcggtgaccaagccgagaaggtcctggctggtgccgccgcc
agcgacatcgacatctggttcccgctggtggagcagctggaggtgccaacaacgtggtgg
gacgccgaagccgacaagtccctcctcatcggggtcttcaaacacggctatgagaagtac
aacacgatgcgggcggaccccgcgctctgcttcctggagaaggccggtggccccgacgag
aaggccgtggcggccgagcagcgcttggacatcgcagacggggtggactttgaggacccc
gagtacaaacccctgctggggccaagcaaggaggtggatgatgagacggacccactgatg
atgttggacgaggagatctcggtggtggatggagatgaaggcgccccccccgcaggcgcg
gcggcgtggccggcgggcgcggtgctgacggcgcggctccggcgcctggtggccgccttc
cagcgctgccagcagcggcagcgcgagcagcgcgagcagcgcgagcagcgcgagcgccgc
cgccgccgctccgaggccacctgcaggctcaaggagatggcgcggagggagaagcagcag
aggtggacccgtcgggaacaagcggatttctaccgggtggcctcaagttttggggtggaa
tttgacccggacgtggggcgcttccgatggggcaagttccgcctcttggccaggttggag
aagaagagcgacgagaacctcaccaagttcttccacggcttcgtggccatgtgcaggcag
gtttgccgcctgccaccggcgcctggagatgagccggcggacccgtcggtggccgtggcg
ccggtgtcgccggctcgcgccgcgcggggcctgcgccgcctgtccttgctgcgcctgctg
cgcgagcaggtcctgcgccacccgctgctcctcagccgcttggccgcgtgcccccccccc
ggcccggacctgccgccctggtggcaacggggccaccacgacggagagctgctgcgcggc
gccgctcgccacggcttggcccatcccgagacgtccatcttggccgatcccgacttctcc
ttctggaggtatctccgggcggttggagatggaggcgtccagcctcaaggcttctcctcc
aaggggcgtcccagcgccgaggaggaggaggtggactcggagaagatgtcggcctcggag
tcgtcggccggggaggaggacagcgaggaggagaggggtgcggaggccccgtgtggggca
gaggaggacgaggacgaggaggacgaggacgaggaagaggacgaggaggaggaagaggag
gaggacgaggagtgtccccccccctcgggggaaggggggtccccggggccccggcccccc
cccccggggcctcggcccttcccgccgccggcccctcccccggccccacggcacctccac
gagtggcccaaggaccgcgcgctgatccggcgcctggacctcgtgtgccgcgcggtgctg
tcgggcgagtggccgagcgaggacaacccggggcccccccaggtccctccgacccctcaa
ccccccttggacccccccatgttcccaccacggccccgccacgaggagaaggagttcacc
gtccagatcaaagacgaggaagggttgaaactgacgttccaaaagcaccgcttggtgccc
aacggggtgacgcgggacccggcccccccgaagaagaacagtaagaagatggtggagctg
gagctgcgctgcctcgagggtctccgcgccgccggcgccgccggcgcccccatggacaag
caccaccaccaccaccaccaccaccccccccccaccgccggccccccgacttcgaccccc
gcttccttccgcctttcctccccaccccccctccaggtttggacctctccaagatggtgg
cgctga
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