Strigops habroptila (Kakapo): 115603829
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Entry
115603829 CDS
T08851
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115603829 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shab03032
]
115603829 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115603829 (TOPBP1)
DNA replication proteins [BR:
shab03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
115603829 (TOPBP1)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
115603829 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
115603829
NCBI-ProteinID:
XP_030332063
LinkDB
All DBs
Position
1:143237528..143273121
Genome browser
AA seq
1523 aa
AA seq
DB search
MKRGKEPVFVKFIKSAGRSEYFYKALESMKEFQSEEHLQILEEETALNIRENDKSLYICD
PFTGVVFNHLKQLGCRIVGPQVVLYCIQAQRCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQLMGGHVCRDLSVAVTHLIAGEVGSKKYIVAASLKKPILLPAWVKTLWDKSQQ
SIMRYTDVNMEDYACPVFLGCTICVTGLNSSDRKEVQRLTVKHGGHYTGQLKMNECTHLI
VQEPKGQKYECARKWNVHCVSIKWFSDSIEKGFCQDETIYKIQAGSKLTPSTSTPTNDVR
KPDNHALPDVSHISNINLSGVNETEFSSALSSRQDPLPDELENLDISSFQAPEDLLDGCR
IYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENSEELKHFLDKTSHRPHVVT
AKWLLDSFSKDYLQPVEQYIPLNYQLLENPILEQPGMKSVLPKNNSLLKKEAVNVKKPQK
AAEDDLLSQYITNDSTLDEAGKLTSRTFSDDTHLSVQGENESSICNGFLGESSALAEGGL
FVRKSFLLLGFGGEDESCIADIIKENAGKILPLQNRTVADYAVVPLLGCTVQLTVGDVVT
NTWLLTCVEQQLLLDPQSNPLFTPVPVMEGVTPLEGCVLSFSQFTGAERDSLVYLAGLLG
ARVQEFFVRKASVKKGMFASTHLVVREAGGSKYEAAKKWNLPAVTVAWLLDSARTGKRAD
ESKFLVENAEAEDESSVTQLNKTPATVKSPDVNQYDYLLEVGRKKAVTPLDISRFQSKAF
QAVISRHMEKTTPLAQGGVLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALESPVGP
DQKTRKPSTPLSEVISRNLKLALANSTRHAAALTASPQLAAAQPEKEEESRPLADVVIYV
SKKLAKKQSELNAVAASLGADYRWCFDESVTHFIYKGGQNDNNKEYKSVKERGVCIVSEH
WLLECAQEYKRLPESLFPHTYNPKMSLDISAVQNDRLSSSSKLPSTGKPSEETEIIPVDE
DDLENDAATDQIKEMVTAGEEQIGASESKGVLTQALEMRENFQRQLQEIMSATSLVKPPG
QRGSLSRNSTDGSPTTPDSTRSARNGRSRVLEALRQSRQAVADINTEPSQSEQIIWDDPT
AREERARLVSNFQWPDSPSQYTEQGQSNANKNMDESAFKGSLADAEIAAIALPEAVDGDV
IEGLKNPVCGDPETPIKDQFIPTPQAPSIAFPLANPPVAPQPKEKNLLLYLQAVTEEEKA
DEEPEKLRKFQLSSFNPEERFDYCHLIKELGGVVLEKQCFDPSCTHTVVGHPLRNEKFLA
SMAAGKWVLHRSYLEACRGAGCFVQEEDYEWGSNSILNVLPGISVNQKKLALAAVRWRKK
IHKGRQETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSVSLFKEATHLFA
DFSKLKPEDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPQAESCLQNNAEL
GMGLSQKRKALGETSRAKRSKVH
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtggtaaggagccggtttttgtgaagttcataaagtctgctgggaggtcggag
tatttttataaagctcttgagtctatgaaagaattccagtcagaagaacatctccagatc
cttgaagaagagacagcgctcaatataagagaaaatgataaatcgctttacatttgtgat
cctttcacaggtgttgttttcaatcatctcaaacagcttggctgtaggattgttggacca
caggtagtcctgtactgtatacaggcccagagatgtgtcccaagagccgagtatcccgtg
tacaacatgaccatggccgatgtaacagtatcctgtaccagcctcgaaaaagatgttagg
gaagaagttcataaatacgtgcagctgatgggtggacatgtgtgcagagacctcagtgtg
gcagtaactcatctgatagctggagaagttggcagcaagaaatacatagtagctgcttct
ctgaaaaaacctattttgcttccagcttgggttaagacactgtgggataagtctcagcaa
agcatcatgagatacactgatgttaacatggaagattatgcttgccctgtgttcctcggc
tgtacaatttgtgtaactggcttaaacagttcagacaggaaagaagtccagcgcctcact
gttaaacatggtgggcactatacggggcagctcaagatgaatgaatgtactcacctcata
gttcaagagccaaaaggtcagaagtacgaatgtgctagaaaatggaatgtgcactgtgtg
tctatcaagtggttttctgacagcattgagaaaggcttctgtcaggatgagacaatatat
aaaatacaagctggatcaaaactgacacccagtacgtcaacacctacaaatgatgtcagg
aagcctgataatcatgcccttccagatgtcagccacatttccaacatcaatctgagtggt
gttaatgaaaccgaatttagctctgctctgagcagcaggcaggatcctcttcctgatgag
ctggaaaacttggatataagttcttttcaagcccctgaagatctgttagatgggtgtcga
atctatctgtgtggcttcagtggcaggaagttggacaagatgaggcggcttattaattgt
ggtggtggtgttcgatttaatcaacttaatgaagatgttacccatgtcattttgggcgaa
aatagcgaggagctgaaacactttttggacaagacatctcacaggcctcatgtagtcaca
gcaaaatggttgctggactcatttagtaaagattatctacagccagtggagcaatatatt
cctctaaactaccagctgttagagaatccgattttggagcaacctggaatgaagtcagtt
cttcccaaaaataacagtctcttgaagaaagaagctgtgaatgttaaaaagcctcagaaa
gctgctgaagatgacctcctctctcaatacataactaatgattctacattagatgaagct
ggaaaactaacatccagaaccttcagtgatgatactcacttgtctgttcaaggagagaat
gaatcttccatctgtaatggttttctgggagagtcgtctgcactagctgaaggaggattg
tttgtcagaaagagctttcttcttttgggttttggtggagaggacgagtcctgcattgca
gatattataaaggagaatgctgggaagatcctgccactgcaaaacagaaccgttgcagac
tatgctgtggtaccgctgttggggtgcacggtccagctgactgttggtgatgttgtcaca
aacacgtggctgttaacatgtgtggaacagcagctccttttagatccccagtccaatcca
cttttcacaccagtcccggtaatggaaggagttacccctctggaaggttgcgttctttct
tttagccagttcactggtgcagagagagactctctggtttatctggcaggactgctagga
gccagagtccaagaattctttgtgcggaaagccagcgtaaaaaagggcatgtttgccagt
acccaccttgtggtgagagaagcgggtggttccaaatatgaagctgcaaagaagtggaat
ttaccagcagtcactgtagcttggcttttggactctgcaaggacaggaaagagagcagat
gaaagcaagttcttggttgaaaatgcagaggctgaagatgagagttccgttactcagctc
aacaagacaccagcaactgttaaatctcctgatgtaaaccaatatgattatctccttgaa
gttggaagaaaaaaagctgtgactcctcttgatatcagcagattccagagtaaagctttc
caagccgtcatctctcgtcacatggagaagacaacccctcttgcacaagggggagtgcta
cagaaagagccgtctttacatctcgatacaccatcaaaatttctttccaaagacaagtta
ttcaagccttcttttgatgtaaaggatgctctggcagctttggaaagtccagtaggtcct
gatcaaaaaaccaggaagccgagcacacccctctctgaagtcatcagcaggaacttgaag
ttggcactggcaaacagcacaaggcatgcagcagctctgactgccagcccacagctggct
gctgcacagccagaaaaggaagaagaatccaggcctctagcagatgttgttatatatgtt
agtaaaaaacttgctaagaagcaaagcgaactgaatgcagtagcagcttctctgggggca
gactacagatggtgctttgatgaatcagtaacacactttatctacaagggaggacaaaac
gacaacaataaggagtacaaatcagttaaagaacggggtgtatgtattgtttcagagcac
tggcttttggagtgtgcccaagaatataaacggcttcctgaatctctctttcctcacaca
tacaatcccaaaatgagcctggacatcagtgcagtgcaaaatgacagactctcttcttcc
agtaaacttccatcaactggaaagccatcagaggaaactgagattattccagtggatgaa
gatgatctggaaaatgatgcagctactgaccaaataaaggaaatggtcactgcaggggaa
gaacaaattggagcaagtgaatccaaaggagttttaacccaagcactagaaatgagggag
aacttccaaaggcagctgcaggagatcatgtctgccacatcactggtgaaaccaccaggg
caaagaggatccctttcaaggaacagtactgatggttctccaactactcctgatagcaca
cggtctgcacggaatggccgcagcagggtcttggaagctctcaggcagtcccgccaggct
gtcgcagatataaacacggagccatcccagagtgagcagatcatctgggacgatcctact
gccagggaggagagagcgagacttgtcagcaactttcagtggcctgatagtccttcccag
tacactgagcaaggtcagagtaatgccaataagaacatggatgaatctgccttcaaagga
tctttagctgatgcagagattgctgctatagctcttcctgaggctgtagatggagatgtg
attgaaggtctaaagaatcctgtatgtggagatcctgaaacaccgattaaagatcagttc
attcccactccgcaggcccccagcattgctttcccactggctaaccctcctgttgcacct
cagcccaaagaaaagaatctgttactgtacctccaggctgttacagaagaagaaaaggct
gatgaagaaccagaaaaactccgtaaatttcagctgtcttcttttaatcctgaagaaaga
tttgattactgccatctgattaaggaattaggtggagtagtgcttgagaaacagtgcttt
gatccaagttgcacacacactgttgtgggacatcctcttcgaaatgaaaagttcttggct
tcgatggcagctgggaagtgggtgcttcatcgttcctacctggaggcatgtagaggagct
ggctgctttgttcaggaagaagattatgagtggggaagtaattccatacttaatgttttg
cctgggatcagtgtaaaccagaagaaactagcacttgctgccgtgaggtggaggaaaaaa
atccataaagggagacaagaaactggtattgttgagggagctttcagtggctggaaagtg
atcctgaatgttgatcaaaccaaggaagcaggattcaggcgccttcttcagtcaggagga
gcaaaagtgttctctggtcattctgtgtctctcttcaaagaagcaactcatctctttgct
gacttcagtaagctgaagccagaggacagcagggtcaacgtagcagaggcagcagcccag
ggagtgaactgcctgaaaccagagtacatcgctgactacctcatacaggacccacctccc
ccaatggagtcttactgcctgccacaagctgaatcttgccttcagaacaacgcagaactt
ggaatgggattgtcgcagaaaagaaaagcactgggagagacaagccgagccaagcgatcc
aaagtccactga
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integrated database retrieval system
