Strigops habroptila (Kakapo): 115604224
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Entry
115604224 CDS
T08851
Symbol
DCHS1
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-16
KO
K16507
protocadherin-16/23
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shab04515
]
115604224 (DCHS1)
Cell adhesion molecules [BR:
shab04515
]
Cadherins
Cadherin related
115604224 (DCHS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
RET_CLD1
Cadherin_4
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
115604224
NCBI-ProteinID:
XP_030332984
LinkDB
All DBs
Position
2:complement(122885785..122938666)
Genome browser
AA seq
3264 aa
AA seq
DB search
MEQIKGSAMLLLELLILGGLRAGKGSAVLGTLDLQIDEEQPAGTIIGDISAGLPPGTSAY
MYFISAQEDSGVTTDLGIDENTGIIKTARVLDRETRDRYSFIAVTPEGITVEVNIQVNDI
NDHAPAFPKQHSTFQIPEHTPIGSRFPLDPAFDADSGLLNTQGYVIKGDNVGQAFRLETR
RGPNGVLYLDLVVSNILDRENRSSYSLLLEAYDGGSPPRSTQMTLDVSIQDINDNAPSFN
QSRYHTLISENLKPGSSILQVFASDADEGDNGDVIYEINRRQSDPDQYFTIDSRTGVIKL
NKGLDYEVRKVHELVVQARDKAVHPEVTTAFVTIHVRDYNDNQPTMTIIFLSEDGSPQIS
EGAQPGQYVARISVSDPDYGEYSNVNVTLEGGDGKFALTTKDNIIYLICVDQLLDREERD
SYDLRVTATDSGTPPLRAESAFVLQVMDINDNPPLFDQQEYKQSIPEVVYPGSFVLQVTA
RDKDQGLNGEVRYSIVHGQDVHSSWFAIDPATGIITTAAPLDYEKDPHPQLTVLATDRGT
PALSSSAVVHVALQDVNDNEPVFRSNFYNMSLKENTPVGTCFLQVTATDADSGTFGSLSY
SIGSGIGSVVPTQFSIDKHTGQLCTVQLLDRDEGTSAYDFTITAVDGGGLNSMVYVKVFL
EDINDNRPVFYPLEYAASISTQSMPGTAVLRVTAHDKDEGLNGRVTYHIVLGNSPPLFSL
NKDTGVISLSWSLSGKANTLVQLVISAQDGGGLQAQPNARVNISIVEGTVSPPVFEQAQY
FFTVPEDMLQGASVGAVRAQNPPGHVDDIFYSISSGDPHGYFSIDSASGQLRTSLPLDHE
SQAILILDVQARSGSPPAYSNTRVKISVSDVNDNVPAFPAPSDSILLPEATEPGTTVYTL
QAEDRDSGANGQVNFELVSGGDGTFSVERLSGAVRLMGALQYEASAAYRLAIVARDSGVP
QLSSTFTLLVHVQAEHDNGPIFDTLTYRVEVQEGVPVSTRFLQVRALARDAESMTLTYHL
RADGDAASFGIMPESGWLYVKSALDRETRDLYVLTVLASAGGSGAGGEARKTGTSTVRIS
ITDENDNSPRLSEERYFFTIPENQAPGSSVGRVMASDRDAGQNSRLTYRLLQHDPNFLIH
TQTGELSTKHSLDREQQSSYQLLVIVQDGGAPPRSATGTIYVTVLDENDNAPAFLHVGSG
QELPVQVLEEKPSGVLVASLQAKDPDEGENGTIIYSLIGAWAERFTLHVATGELRTATVL
RRSDRAEYLFTVTASDRGVVPRSTSASIRVQVLPSSRVLPRPDATVLTLHPLEGVKPGSV
IGSVAPPDAPARGQLTYTLVGGGGDGTFVVDSVTGEIYAARELDYEAGARHVLQVSAEDT
QHGYPSSRLVLVQIHVQDCNDQAPTFPEDPITIVVPENAQAGSSIFTFQALDGDGVGPNS
QVRYRLLHQEPSGAPFQLDGRSGLLTLRRSLDREAAASFLLVVEATDQARNISQRRSAAV
TARVFVTDENDNAPVFLSPTAVSVMEDQPTGFVALHVVAQDKDLGENGRVSYSLRAGNSD
GRFHLNPSTGALSIVRALNREEVVQHNLTVVAMDHGFPRRSATQLLAVLVLDVNDEAPTF
EKPEYEAHVMENLPAGSPVLQVLATDRDLGANGQVSYGGLSGGPFSIHPQTGLIITTHAL
DREEQEQHVLMVYARDGGLPPNLSKATVRITVGDENDHAPHLESESCSVEVPENQSRVAL
YTLRATDPDGGENGRLEYRLAGGDPGQDFSLDPVSGVLSTAHALDREQVASYSLTVVVQD
HGTPPRSATMSVHVQVLDLNDNAPGFTQAAYMVEVPEDLPVGALVLQLVAHDPDEGTNGQ
VSYYLGNESLGMFQVEPQSGRISSAQALDRERQPSYSFLAKAVDSAPWEPKSAAVRVTVT
VRDVNDHAPAFLHSPLTVNLSRHTPLKQVVATMRAEDRDAGANASILYRLATPNSAFAIN
SYTGDIQLLQPLGSLSQRQRTLFILATDLGQPALSSTGVVVIHVQEEPFRGLRFPRSTSD
VALPENAAPGTAVASIQAMHTGGSSGRITYSIISGNEKAAFLIQPSSGAISVQDSSSLDF
EASPRLRLVVQAETAASFGFMAINLNLQDVNDNLPRFQLQNYVAFIWESQSYDSPVIQVL
ADDLDQGANGQVTYAINQSLPMTGLYHIDPQTGTITTAAILDREIWSQTRLVVTAMDRGT
PPLVGSATLTVVVMDVNDNSPTIPFPWEVRVPENTLLGTQIAQLTGNDVDSGPALSYTLL
LDGDAVGTFSVLRYGGRIALTGPLDYEQRSHYTLTLRASDTRHETEANLTVIVEDVNDNA
PTFSQSFYQVPLAEHTPAGSIILTVSATDPDAGTNGNVTFCLAMPSPDVAIDPSNGTLFT
LRQLEFDASQPTLDLVVKPXPRLASLSSWATVQLQVLDVNDHSPSFQEPRYNASIPEDLR
PGTTVLTMEAGDADVSRENAGFDYTIVSGNGGNAFRVESRVAWAGGHLRTQGALVLVEPL
DFEAIPVYNLTVAASDRGLPQRSTTVPVLITVQDVNDNPPVFTRAEYRTAVSESAPPGTE
LLRLVAHDADSGPRGHVHYTISSGDQHGLFQLHESTGALCLAQPLDREVQALHALVVQAT
DVPGGHFALVPVAIEVRDVNDNKPYFPVEVLSASMRENLPPGTLVTTLRAVDADSGVFGE
LRYTVLEQAVGEPGVAEGRDAFAINSSSGELRSRLTFDYERAKAFQFLVRATDTGNASAT
VTVRVLVTGEDEYDPIFLSPSFNFEVPEGARKGQSIGRVLATDEDEGADGVVLYSLAKPS
PYFAINQTTGTIYLRVDSQPQAGAGRAKREPREMSLEVQARSPLPASRSASAQVTIDVTH
TSFGLAPDLNLLLVAVAASLGVVVVLAAVAIVLALVRSRHRRGHEKPEGDGPLGRVPSGS
LQKLGREEPALPGSEHIYHQALPGYGGEPAGPYTRGGSLDPSHSSGRGSAEAAEDDEIRM
INEYPRVASITSSMQEHISARGPDSGIQQDADQLSDISCEPAALESTQWFKSKRALGWLL
PGPPPLYREDGGGSAFLGVRCGLSVSSSLRTTTFPEDGKPSVEARSTAIVASDEELRGSY
NWDYLLNWCPQFQPLASVFTEIARLKDESSLRKPFPTKPKAEPKPRIDPPPLITSVAHPG
AKSVPPKPPPGRTFPHPSSLRRSPISHEGSISSSAMSPSFSPSLSPLAARSPVVSPFGIS
QGPSASAISAEHSLEPPEEAELRI
NT seq
9795 nt
NT seq
+upstream
nt +downstream
nt
atggaacagattaaggggtcagccatgcttctgctggagctgctaattcttggaggcctg
agagcagggaagggctctgctgtcctgggcaccctggatctacaaatagatgaggagcag
ccagctggcaccatcattggggacatcagtgctggcctgcccccaggaactagtgcctac
atgtattttatctccgcacaggaggacagcggcgtcaccactgatttggggatagatgag
aacaccggtatcatcaaaacagctcgtgtcttagaccgagagactcgagaccgctacagc
ttcattgctgttaccccagagggcatcacagtagaagttaacatccaagtgaatgacatc
aatgaccatgctccagcctttcccaaacagcacagcaccttccagatcccagagcacaca
cccattggcagtagatttcccttggacccagcctttgatgctgacagtggcctactcaat
acacagggctatgtgattaagggagacaatgtggggcaggccttccgcctggagacacgt
cgaggacccaacggggtcctgtatttggacctggtggtcagcaacatcttggatcgggag
aaccgttcgtcatattcgctgctgttggaagcctatgatggtggctctcctcccaggagc
acccagatgacgctggatgtgtccatccaggacatcaatgacaatgctcctagctttaac
cagagccgctatcacactctcatctcagagaatttgaaacctggcagcagcatcctgcag
gtctttgcctctgacgcagatgaaggtgacaatggggatgtgatttatgagatcaaccgt
cggcagagtgatcctgaccagtacttcaccattgactcccggactggagtcatcaagctc
aacaagggcctggactatgaagtaaggaaggtgcatgagctggttgtacaggcaagggat
aaggctgtccatcctgaggtcaccacagcctttgtcactattcatgtgcgtgattacaat
gacaaccagcccaccatgactatcatcttcctgagtgaggatggctccccgcagatctcc
gagggagcccagcccggccagtatgtggcacgcatctctgtttctgacccagactatggc
gagtactccaatgtcaatgtcacactggagggaggggatggcaagtttgctctcactacc
aaggacaacatcatctacctgatctgtgtggaccagcttctggatcgggaagaaagggac
tcctacgatttgcgggtgacagctactgactcaggaactccccctctccgggcagaatca
gcctttgtgctgcaagtgatggatatcaatgacaaccccccactctttgaccagcaggag
tacaaacagagcatccctgaggttgtgtacccgggcagttttgtgctgcaggtgacagct
cgtgacaaggaccagggtctcaacggggaggtgcggtacagtattgtgcatggccaggac
gtccactccagctggtttgccattgaccctgccacagggatcatcaccaccgctgcccca
ctggattatgagaaggatcctcatcctcagctgacagtgctggccacagacaggggaacc
cctgctctctcctcttcagctgtggtgcatgtggccctgcaggatgtcaatgacaatgag
ccagtgttcaggagtaacttctacaacatgtccctgaaggagaacacccctgttgggacc
tgcttcttacaggtgacagccacagatgcagacagtggcacgtttggctccttgtcctac
tccattggttctggcattggcagcgttgtccccacgcagttcagcattgacaagcacacg
gggcagctgtgcactgtgcagctgctggatcgtgatgagggcacgtctgcctatgatttc
accatcactgcagttgatgggggtggcctgaactccatggtgtatgtgaaggttttcctg
gaggacataaatgacaaccgtccggtgttttacccgctggagtatgctgcgagcatcagc
acccagagcatgccaggcacagcagtgctgcgtgttactgcccacgacaaggacgagggg
ctgaatgggagagtgacctaccacattgttctgggaaactcaccccctctcttctccctc
aacaaggacacgggtgtcatctccctctcatggtccctgagtggtaaagccaacaccctg
gtgcagctggtgatctctgcacaagatggtgggggcctgcaggcacagccgaacgcccgc
gtgaacatcagcatcgtggaggggacagtctcaccccctgtctttgagcaagctcagtac
ttcttcacagtgcccgaggacatgctgcagggtgccagtgtgggggctgtccgggctcag
aaccctccaggccatgttgatgacatcttttattccatctcctcgggggatcctcatggc
tacttttccattgattctgcctccgggcagctccgcaccagcctgcctcttgaccatgag
tcccaggcaatcctcattctggatgtccaggcccggagtggttcacctcctgcctatagc
aacacacgtgtgaaaatctctgtgtcagatgtgaatgacaacgtgccagcgttcccagcc
ccctccgactccattctgctgccagaggccacggaacctgggactacagtgtacactctg
caggctgaggaccgtgacagtggtgccaacggtcaggtgaattttgagctggtgtcagga
ggtgacggcaccttcagcgtggagcgcttgtcaggagcggtgcgactcatgggggccctg
cagtatgaagccagcgcagcatacaggctggccatcgtggcccgtgacagtggtgtgccc
cagctcagctccacgttcacgctgctggtgcacgtacaagctgagcatgataacgggccc
atctttgacacgctcacctaccgcgtggaggtgcaggaaggtgtccctgtgtccacgcgc
ttcctgcaggtccgggccctggcacgcgatgcagaatccatgaccctcacctaccacctg
cgtgcagatggggatgctgccagctttggcatcatgcccgagagtggttggctttatgtc
aaaagtgctctggaccgtgagacacgggacctgtacgtgctcacagtgctggcctcagcg
ggaggcagcggtgctgggggggaagcccggaaaacgggcaccagcactgtacggatcagc
atcactgatgagaacgacaacagcccccggctgagtgaggagcgttacttcttcaccatt
cctgagaatcaggctcctggcagcagcgtggggagggtgatggcgagtgaccgggatgct
gggcagaacagccggctcacctaccgcctgctccagcatgatcccaacttcctgatccac
acgcagacaggggagctcagcactaagcatagcctggaccgggagcagcagtccagctac
cagctcctggtgatcgtgcaagatgggggagcaccgccccgcagtgccacaggaaccatc
tatgtcactgtgctggatgagaacgacaatgctcccgctttccttcacgtgggcagtggt
caggagctgcccgtgcaggtgctggaagagaagccttcgggagttctagtcgcctccctg
caggccaaggatcccgacgagggcgagaatgggaccatcatctactcactgataggagcc
tgggcagaacgtttcaccctgcacgtggctactggggagctgcgcactgccaccgtcctg
cgccgctcggaccgtgcggagtacctcttcactgtgacagccagcgaccgcggtgtggtg
ccccgcagcacgtcagccagcattcgcgttcaggtgctgccatcctctcgggtgctgccg
cggcctgacgccactgtgctgaccctgcatcctcttgagggggtcaagccaggctctgtg
atcggctcagtggcacccccagatgctcctgcgcgaggacagctgacctacacgctggta
ggaggtggtggggatggcacctttgtggttgacagtgtgacaggggagatttacgctgcc
cgggagctggactacgaagctggggcacggcatgtgcttcaggtgagcgctgaagacacg
cagcatggatacccctccagccggctggtgctggtccagatccacgtgcaggactgcaat
gaccaggcacccaccttccccgaagaccccatcaccattgtggtgcccgagaacgcccag
gctggctcgtccatcttcaccttccaggcactggacggggacggggtgggtcccaacagc
caagtgcggtacaggctgctgcaccaggagccatccggggcacccttccagctcgacggc
cgctcagggctgctcaccctccgccggagccttgaccgggaggctgctgcctccttcctc
ttggtggtggaggccacggaccaggctcgcaacatcagccagcgccgctcagcagccgtc
acagcccgtgtgttcgtgaccgatgagaacgacaacgcgcccgtgttcctctcgcccact
gccgtcagcgtcatggaggaccagccaacggggttcgtggcactgcatgtggtggcccag
gacaaggatctgggggagaatgggcgtgtgagctactcgctgagagcaggcaacagtgat
ggacgcttccacctgaaccccagcactggcgcgctctccattgtgcgggctctgaaccgg
gaggaggtggtgcagcacaacctgaccgtggtggccatggaccacggcttcccgcgccgc
tccgccacacagctgctggccgtgctagtgctggatgtcaacgatgaggctcccactttt
gagaaacccgagtatgaagctcacgtcatggagaacttgccggctggcagccctgtgctg
caggtgctggccacagaccgggacctgggtgccaatgggcaggtgtcctatgggggtctc
tctggggggcccttctccatccacccacagacagggctcatcatcaccacacacgccctg
gaccgcgaggagcaggagcaacatgtgctgatggtctatgctcgggatggtggcctgccc
cccaatctctccaaggcaactgtgcggataacagtaggggatgagaatgaccacgcgcca
cacctcgaaagcgagtcctgctccgtggaggtcccggagaaccagagtcgtgtggcactc
tacaccctgcgggccaccgaccccgatggaggcgagaacgggcgcctggaataccgcctg
gcaggtggagaccctgggcaggatttcagcctagacccagtctctggtgtcctctccact
gcacatgctcttgaccgggagcaagttgcttcctacagcctcacagtggtggtgcaagac
catggcacccccccacgcagtgccaccatgtctgtgcacgtgcaggtgctggacctcaat
gacaacgctcctggtttcactcaagctgcctacatggtggaggtgccagaggacttgcct
gtcggtgccctggtgctgcagctggtggctcatgacccggatgagggcacaaatgggcag
gtctcttactacctgggcaacgagtcccttggcatgttccaggtcgagccgcagagtggg
cgtatcagcagcgcccaggcactggaccgggagcgccagcccagctacagcttcctcgcc
aaggctgtggactcggcaccatgggagcccaagagcgcagccgtgcgtgtcaccgtcacg
gtgcgagatgtcaatgaccatgcccctgccttcctgcacagcccactcaccgtcaacttg
tcccgccacacaccactcaagcaggtcgtggccaccatgagggcagaggacagggatgcg
ggtgctaatgcctccatcctgtaccgccttgccacccccaactctgccttcgccatcaac
tcctacaccggggatatccaactgctgcagcccctgggctcactcagccagcgccagcgg
acgctcttcatcctggccacagacctggggcaaccggcactctcctcgacgggggtggtg
gtgatccatgtgcaggaagagcctttccgcgggctgcgctttccccggagcaccagtgac
gtggctctgccggaaaacgctgccccaggcactgcagtggcgagcatccaggccatgcac
acagggggctcctccgggcgcatcacctacagcatcatcagtggcaatgagaaggcggct
ttcctcatccagcccagctcaggtgccatctcagtccaggactccagcagcctggatttt
gaggccagcccccggctgcgcctggtggtccaggcagagacagcggcttccttcggcttc
atggccataaacctgaacctgcaagatgtgaatgacaacctgccacgcttccagctgcag
aactatgtggcgttcatctgggagtcacagagctacgactcgcctgtcatccaggtcctg
gcagatgatttggatcagggagcaaatgggcaggtgacttatgccatcaaccagtccctg
ccaatgacaggcttgtatcacatcgatcctcagactggcaccatcactactgctgccatc
ctggacagggagatctggtctcagacccgtttggtggtaacggccatggacagagggacc
ccgccgctggtgggctcggccacgctgactgtggtggtgatggacgtcaatgacaacagc
cccaccatcccgtttccctgggaggtgcgggtcccagagaacacgctgctgggcacacag
atagcccagctaaccgggaacgacgtggactcaggccctgcactctcctacacgctcctg
ctggatggggatgctgtgggcacgttcagtgtgctgcgctacggcgggcgcattgcgctg
acagggccgctggactatgagcagcgcagccactacacgctcaccctgcgagcctccgac
acccgccacgagaccgaggccaacctcactgtcattgtggaggatgtgaatgacaacgct
ccaactttcagccagagcttctatcaggtgccgcttgccgagcacacgcctgcaggcagc
atcattctcaccgtgagcgcaactgacccggatgcagggaccaatgggaatgtcaccttc
tgcctggccatgcccagccccgatgtcgccatcgaccccagcaatgggacactcttcacc
ctccggcagctggagtttgatgccagtcagcccaccctggacctggtggtgaagccatga
ccacggctcgccagcctctcctcctgggccacagtgcagctccaggtgctggatgtgaat
gaccacagccccagcttccaggagccacgctacaacgccagcatccctgaggacctgcgc
ccaggaactacagtgctgaccatggaagcaggcgatgcggatgtctccagggagaatgct
ggctttgactacaccatcgtcagtggcaacggtggcaacgccttccgcgtggagagccgg
gtagcctgggctgggggacacctccgcacgcagggagccttggtgcttgtggagcccttg
gactttgaggccatcccggtctacaacctcactgtggcggcctcagaccggggcctgcca
cagcgcagcaccaccgtgcctgtgctcatcaccgtgcaggatgtaaacgacaacccgccc
gtgttcacgcgggccgagtaccgcacagcggtgagcgagagcgcaccacctggcaccgag
ctgctgcgcctggtggcccacgatgctgactcggggccccgcggtcacgttcactacacc
atcagttcaggggaccagcacgggctcttccagctgcacgagagcaccggggccctgtgc
ctggcgcagccactggaccgggaggtgcaggcgctgcacgcgctcgtggtgcaggccaca
gatgtgccaggcgggcactttgcactggtaccggtggccatcgaggtgagggatgtcaat
gacaacaagccgtacttcccggtggaggtgctgagtgccagcatgcgggagaacctgcct
cctggcacactggtcaccacgctgcgtgctgtcgacgcggacagtggtgtcttcggggag
ctgcggtacacggtgctggaacaggcagtgggggagcccggtgtggctgagggccgcgat
gcttttgccatcaacagcagctctggggagctgcgctcccgccttacttttgactatgaa
cgagccaaagccttccagtttcttgtcagggccacggatactggcaatgcctctgccaca
gtgaccgtgcgggtgctggtgacgggggaggatgaatacgaccccatcttcctgagcccc
tccttcaacttcgaggtgccagagggagcccgcaaagggcagagcatcggacgggtgctg
gcaacagatgaggatgagggggctgacggcgtcgtactgtactccctggcaaagccctca
ccgtactttgccatcaaccaaaccacaggcaccatctacctgcgtgtggacagccagcca
caggctggggccgggcgcgccaagagggagccacgtgagatgagcctggaggtgcaggcg
cgcagccccctgcctgcctcgcgctcggcctcggcgcaggtcaccattgatgttacacac
acctcctttggcctggctcccgacctcaacctgctgctggtggccgtggccgcctcgctg
ggggtcgtggtggtgctggctgccgtggccattgtgttggcgctggtccgctcccggcac
cgccggggccacgagaagccggagggagatgggccgctgggccgcgtgccaagtggatcc
ctgcagaagcttggccgcgaggagccggcgcttcccgggagcgagcacatttaccaccag
gccctgccggggtacggcggtgagccggcagggccctacacgcggggcggctcgctggac
ccctcgcactccagcggccgaggctctgccgaagccgctgaggatgacgagatccggatg
atcaacgagtacccgcgtgtggccagcatcacctcctccatgcaggagcacatctctgcc
cgtggccccgactctggcatccagcaagatgccgaccagctctccgacatctcctgcgag
ccagctgccctggagagcacccagtggttcaagagcaaaagggctctgggctggctgctg
ccggggccgccaccgctgtaccgcgaggatggaggtggtagcgctttcctcggtgtgcgc
tgtggccttagtgtctcttccagcctcaggactacaaccttcccggaggatggcaagccc
tctgtggaggctcgctcaactgccatcgtggccagcgatgaggagctccgtggcagctac
aactgggattacctgctgaactggtgcccccagttccagccactggccagcgtcttcaca
gagatcgcccgcctcaaggatgagagctctttgcgcaagcccttcccgaccaagcccaag
gcagagcccaagccccgcatcgaccccccacccctcatcacctcggtggcccacccgggt
gccaagtctgtgccccccaagccaccgccgggcaggaccttcccacacccatcctccctg
cgccgctcgcccatcagccacgagggctccatctcctcctctgccatgtcgcccagcttc
tccccctcgctctccccgctggccgcccgctcccccgtggtctcgccctttggcatctcc
caggggccttctgcctctgccatcagcgccgagcactcgctggagccccccgaggaggct
gagctcaggatttag
DBGET
integrated database retrieval system
