Strigops habroptila (Kakapo): 115604279
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Entry
115604279 CDS
T08851
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115604279 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115604279 (PCF11)
03019 Messenger RNA biogenesis [BR:
shab03019
]
115604279 (PCF11)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115604279 (PCF11)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115604279 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
DUF6980
Motif
Other DBs
NCBI-GeneID:
115604279
NCBI-ProteinID:
XP_030333091
UniProt:
A0A672TIR5
LinkDB
All DBs
Position
2:115637257..115658703
Genome browser
AA seq
1701 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESAAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSPSVASVPAPSKQHMSSTPHMPVKAPHQTAVQSEKNKPSPSPPLHDVKIANRDPRLNRM
SQHSSHGKDQSHRKEFPPSTTSQSDTKPSKTAQSEKQNSTKQEKSKASEKTQKKELDQSE
AKSKSPSPLKNKQPSTKDTKSQECESTKISDISKRDPRLKRHLQDKEGKEEEVKEKRRST
EKKEKEEHKTGEHRPAGSRNKVINGAVQKQDTSTEESEKQGGKQGRSSNRKRSRSRSPKA
RSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHAEESTQAARDERNSTK
RNAKQEVRDPRRVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENK
NTQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRE
LLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSD
AELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFDR
KEPFGERARRHSPVSGTTRPFADNLSPLEGRRRLEEPNATKGARGSKNFDPYDSWGESEE
FRDALRQQGKSTSTEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRTRYED
PEKAPFPESPGSRFGGIEAKQRISALMEERPLFDGSPRQAAARVGVDGQGSPFGDAPAAG
SSSRIDGPPGQAAMRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPP
GQGGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPGVGPRLIDGPIHQGAGGLRFDGPLGRAGP
RFDGCHAAGFDGQPGQLSLLQRFDGIHGTPGPRFERAPGQQAQPRFDTAIPQRFDGPHQP
ASRFDLPLGLQGARFENVANHPASRLELSPYGQGGPFVDHPSQGYNGPSHGMQFQRPDLF
DGSPGPNFNGPAGPGAQNFPLRAAGHYFEEKGLQGPQYGNFNNMPMGSNQVSLMSAQAGP
YGQGQQYLPNPGSFVQNPAGAVPHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQ
VNEASAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTT
SQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKA
HEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVEEK
IYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLDIVKQETEESCESPKVKEEPDDTPP
ACAEESTPASTDIKTEPDESV
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaagacctgacgttcaacagcaagccgcatatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagcttccagttatgtaccttatggattccattgtc
aagaatgtcggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgagaatactaggaaaagtttatttaagttacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctgctgcacctacctctgctgtcact
tctggtgcctctactcctcctgctgttcctgaaatacaaaagaatttgacacaggagcaa
ctcataaggcagcaattgcttgcgaagcaaaagcagttgttagaacttcaacaaaaaaaa
ctagagctggagctggaacagacgaaagcacagttggctgtatctcttagcgttcagcaa
ggatcaccgtctgtagcttcagttccagcaccttcgaagcaacacatgtcttccacacct
cacatgccagttaaagcacctcatcagactgctgtgcaatctgaaaaaaacaagccatcc
ccaagtcctccacttcatgatgtcaaaatagcaaacagggatcctcggcttaacaggatg
agtcaacattcttctcacggtaaagatcagtctcataggaaagagtttccaccgagcaca
accagtcagtctgataccaagccaagcaaaacagcccagtctgaaaagcagaactcaaca
aagcaagagaaatcgaaagcaagtgaaaaaacacagaagaaagaacttgaccagtcagaa
gcaaaatctaaatcaccatcccctttgaaaaataagcagcccagtactaaagatactaaa
agccaggaatgtgaaagcacaaaaatatctgatattagtaagcgggatccaagactgaaa
agacatcttcaggataaagagggcaaagaggaggaggtgaaggaaaagaggagaagtaca
gagaagaaagaaaaagaggaacataagacaggtgaacacagaccagcaggcagcagaaat
aaagtcattaatggtgctgttcagaaacaagacacaagtacagaggagtcagagaaacag
ggtgggaaacaagggagatcaagtaacaggaaacggtcacgatcgcgctcccctaaggca
cggtcaccgtctacacattctccaaaaagacgggagaggaggtcacccaaaagaagactc
aggagtttatctcctacttcatcaactccaaaaattggaaagatccgtcagataggccct
aagcagtctcatgctgaagaaagcacgcaagctgcaagagatgaaagaaattccactaag
aggaatgctaaacaagaggtgcgagatccgaggagagtgaaaaaagcccaagaagacagg
ccccaagaaacagcaagccagcattctactaaagcttctcctgatccaaaggagaacgca
gagaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaataaa
aacacgcagcagaatgaagagcaccaagcacttggtaaatcccctcaccaaagacaccgg
gaaaactggcctgctggcaaaggaattctgtcaccccgagcaccaaagcagcagcaccgg
ttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagcaagagagaa
ttactgaaaaaggccaatgaacgcttgacatcaggtgaaataacccaggatgagttcctc
atggtggctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgtaat
gtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctgtcggat
gcagagttaacctattatgaacataaagctaaactaaaaagaacccaagttcagcattcg
ttgtcaaggcttgatctgttggatcctgatgatattctggattatcatatacctgatgca
ttgctttctggaatagagtgtgagcaagcaaaagccaagcgtggagtacagtttgatagg
aaagagccatttggggagagagcgaggagacactctcctgtaagtggcactaccagacct
ttcgctgataacctctcgcctcttgagggtcgacgaagacttgaggaaccaaatgctact
aagggagcaagaggttccaagaacttcgatccttacgacagctggggagaatcagaggaa
ttcagagatgctctgagacaacaggggaaaagcacatccacagagttccagaaaatagat
ggtgatgcaatctgcagattcgataatcgtgaggaaagacaacttcttgggcaagccggt
gttcgagaggaaccccggtccccgttcagtgaacgtttcaaaagaactaggtatgaagat
ccagagaaagcaccatttccagaaagtccgggatcgagatttggaggcattgaagcaaag
cagaggataagtgcactgatggaagagagacctctattcgatggctcgcctaggcaggct
gctgcaagggttggggtagatggacaaggaagcccttttggtgatgctcctgctgctggc
tcgagttccaggattgatgggccacctggacaggctgctatgagatttgaggggcctttg
gtgggagcgggtgcatctcagttcgatggaccgctggcaggagcagggggagctggagcc
ctaaggtttgatgggccaccagggcagctggcaggggccctgaggtttgaaggaccccct
ggacagggtggtggaggaggtccactgagatttgaaggccctcttgggcagataggtggg
ccattgcgcttcgaggggcctgcagggcagcctgtaggtggtcctaggtttgaaggaccc
ggagttggcctcaggtttgagggtccccgtggtcagccttcaggtggtctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgag
gggccacatttacagccattggggccccatggtcaacctggaggtggcctcagatttgag
gggcccatggggccccatggaccatcaggtggtgggctcagatttgaggggccacatgga
ccatcaggaggtgggctcagattggaaggaccaggtgtaggtcctaggttgattgatgga
ccaatacaccagggagctggtggacttagatttgatggtcctttgggtcgggccggccca
aggtttgatggttgtcacgcagctggatttgatggtcagcctggacagctgtctctgtta
caaagatttgatggaatccatggaacacctggtccaagatttgaaagggctcctggccaa
caggcacaaccacgttttgatacagccatacctcaaagattcgatggacctcaccagcca
gcctctaggtttgacttgccacttggccttcaaggtgcacgcttcgaaaatgtagctaac
catcctgcctcaagactagaactgtccccatatggacaaggtggtccatttgttgaccat
cccagccagggctacaatggaccatctcatgggatgcagttccagagacctgatctcttt
gatgggtcgcctggaccaaatttcaatgggccagctgggcctggagcacagaacttccca
ctgcgagcagctgggcattactttgaggaaaaagggcttcaaggtcctcagtatggaaac
ttcaataacatgccaatgggaagtaatcaggtttctctcatgtctgctcaagcagggcct
tatggccaaggtcaacagtatttgccaaatcctggaagttttgttcagaaccctgcagga
gccgttccacattcgtaccctgataaccaccttgggcaggtcgatgtcaatgagttgttc
gctaaactgctgaaaacagggatcctcaaactgtcaaaaactgattccacttcagcacaa
gtgaatgaagcatcagcccagccagctgctgaagaggaagatgatgaccagaatgaagat
cagaatgtcccagacctcactaacttcactgttgaagaattaagacagcgttacgatagt
gttataaatcgtctgtacactggaattcagtgttactcgtgtggaatgagattcaccact
tcacagacggatgtttacgcggatcatttggattggcattatcgtcagaaccggacagaa
aaagatgttagcagaaaaatcacacacagaagatggtactacagcttaacagactggatt
gaatttgaggaaatagctgacctcgaggagcgtgcaaagagccagttctttgaaaaagct
cacgaagaggttgtgctgaagacacaagaagctgcaaaagagaaggagtttcagagtgtc
cctgcgggacccgctggagcggttgagagctgtgaaatttgccaagagcaatttgaacag
tactgggatgaggaagaggaagagtggcacctgaagaatgctatccgagtagaagagaag
atttaccatccatcttgctacgaagattaccaaaacacatcatcattcgattgcacgcca
tctcccagcaaaactcctgtagaaaacccactaaatataatgttggacattgttaagcaa
gaaacagaagagtcctgtgagtcacctaaagtgaaagaagaacctgatgacacccctcct
gcctgtgcagaagagagcacacctgcatctacagacataaagacagaacctgatgagtct
gtttaa
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integrated database retrieval system
