Strigops habroptila (Kakapo): 115604376
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Entry
115604376 CDS
T08851
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115604376 (SCAF4)
03041 Spliceosome [BR:
shab03041
]
115604376 (SCAF4)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115604376 (SCAF4)
Spliceosome [BR:
shab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
115604376 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
115604376
NCBI-ProteinID:
XP_030333296
LinkDB
All DBs
Position
2:complement(28076547..28120898)
Genome browser
AA seq
1092 aa
AA seq
DB search
MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSATAPMTENATNNEGSPPPPAKVASEPPQVTANSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPQKPQSPVIDNTVMAQVQAITAQLKTTAAQQ
PEQKAAFPPPEQKTSFDKKLLDRFDYDDEPEAVEDSKKEDSAPSPSVSQPALTPLSFSAQ
AGWCSIPGGFPAEGMQQPVFPQLPNMDPFQQRMMGIQQDPMRHQVPLPPNGQMPGFGLLP
TPQFPPMAQPVIPPTAPVQQTFQSPFPVQSESHMQKPHQQDMEVEQPPTQEGKRHVSDNR
KSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPKSRSQERRERERERERRS
KGLPQIKSETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVH
RQDAYRALQKLSRGNFKVNQKSIKIAWALNKGIKPDYKQYWDVELGVTYIPWDKVKPEDL
ESFCEGGMLDNETLSPEWKGIPKKSENEVAQNGGAEATHNEPVSPIPKALPVPMPVPMPA
PITVPPPQVPPHPSGPPVVGALQPPAFTAPLGIPPPGFAPGVPPPPPPPFLRPGFNPMHL
PPGFLPPGPPPPITPPVSVPHTPAVNIPNSTATGVNEDTTKDSSIGNPIPTVVSGSRGTA
ETTDSSKIYGTVPPPVAPTNVPAPVTQAIPHLGTQGVAPPPPAPVVGLQTPSTGLLGARP
GLIPLQRPPGMPPPPLQRFPLMPPRHMPPHMMHRGPPPGPGGFGMPPPHGMKTPFPPPGH
FVRPGGMPGSGAPGGPEENRDGRQFRNDRQTFTPNRDQERFGRRSYGNRVENDRDRYGSR
NDDRDHERLGSRDRRDWGRRSPERDRHRDLEDRNRRSGGHRDRERDSRDRESRRDKEETR
GKEKAEMTDRADSDKNHESHGSKMEDADIVSELTSGDSEPTGVKPAEELTPEATSSLEQA
EKDLGSVSEAPR
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaacgccttcaaccaggagctcttttcactgatggagatgaaacctcct
atttcccgagcaaaaatgattctcatcacaaaagctgccattaaagctattaagctctac
aagcatgttgtccagattgtggagaagtttatcaaaaagtgcaaaccggaatataaagtc
cctggattgtacgttattgactctattgttcgtcagtctcgtcaccagtttggaacagac
aaagatgtttttgggccaagattctctaaaaatattactgccacattccagtatttgtat
ctctgtccatctgaagacaagagtaaaatagtccgtgtcctgaacctttggcagaaaaat
ggagtatttaaaattgaaataattcagcctcttctggatatggcagcaggaactagtgct
acagcaccaatgacagaaaatgctactaataatgaaggttcgccgccccctccagcaaag
gttgcttcagagccccctcaagttactgctaactcagtacctactgtgccacagttaccc
agttctgatgcctttgcagctgtagctcagttgttccaaacgacacaaggacaacagctt
cagcaaattcttcagacttttcaacagcctcaaaaaccccagtcacctgtcatagataac
actgtgatggctcaggttcaagctattactgctcagctgaaaactacagcagcacaacag
ccagaacaaaaagctgctttcccaccacctgagcaaaaaacatcctttgacaaaaagctg
ctagatcggtttgactatgatgatgaaccagaagcagtggaagattcaaagaaagaagat
tcagctccttctccttcagtttctcagccagctttgacccctctctcattcagtgcacag
gctggatggtgctcaatacctggtggatttccagcagaaggtatgcaacagccagtattt
cctcaactccccaatatggatcctttccagcagcgaatgatgggaatacaacaggatcca
atgcgccaccaggttccacttcctcctaatgggcaaatgccaggttttggtctcttgcct
actcctcagttcccacccatggctcagcctgtgattccaccaacggcacctgtgcagcaa
acttttcagtctccttttccagtacagagtgaatcacacatgcaaaaaccacatcagcag
gatatggaagtggaacagccacctactcaagagggaaaacgtcatgtttctgacaacaga
aagtcaaggtctagatctgcatcaaggtcacctaaaaggagacgttcaagatctggctcc
cgatctcgaaggtcgcgccatcgtcgatctcgatctcggtccagggatagacgccgacac
tctcctaagtctcggtcacaggagagacgtgaacgtgagcgggagagagaacgcaggtca
aaaggtcttcctcaaatcaagtcagaaactgttagtgtctgtagtactacactttgggta
ggacaacttgacaaaaggacaactcaacaggatgttggaagtcttttggaggagtttggc
ccaattgaatcaataaacatgataccacctagaggatgtgcctatattgtcatggttcac
aggcaggatgcttaccgtgccctgcaaaaactgagccgaggaaacttcaaagtcaatcag
aaatctataaagattgcatgggctttgaataaaggaataaagccagattacaagcagtat
tgggatgtagaattgggtgttacttacataccatgggacaaagtgaaacctgaagatctt
gaaagtttctgtgaaggaggaatgttggacaatgaaactcttagtccagagtggaagggt
attcccaagaaatctgaaaatgaggtagctcaaaacggaggtgcagaagctacacataat
gaacctgtgtcacctatacctaaagctttacctgttccaatgcctgttcccatgcctgca
ccaattacagtacctcctccacaggttcccccacatccatcaggtcctcctgtggttggt
gcacttcaaccacctgctttcacagcacctttaggaatcccacctcctggatttgctcct
ggagtgccaccaccaccacctcctccatttctacgacctggtttcaacccaatgcattta
cccccaggcttccttcctcctggaccgccaccacctataactcctccagtatctgttcct
cacactccagcagtaaacatcccaaattctacagcaactggtgtgaatgaagacactaca
aaagattcatctataggaaatcccatcccaacagtggtttctggatccagagggactgct
gaaactactgatagttccaaaatatatggaactgttccacctcctgtagcacctactaat
gtacctgctccagtcacccaagctattccacatcttggcactcaaggagttgcacccccg
ccgccagcccccgttgttgggttgcagactccatccactggcctcttgggtgcccggccg
ggtttgataccactccagcgaccgcccggaatgccaccccctcctctgcagcggtttccc
ctgatgccaccacgacacatgcccccccacatgatgcacagagggcccccgccagggcca
gggggctttgggatgcctcctccccatggaatgaaaacccccttcccaccacccggtcac
tttgtgagacctggggggatgccgggaagcggggcaccgggtggacctgaggagaacaga
gatgggaggcagttcaggaatgacaggcagacgttcacgcctaacagagaccaggaaagg
tttggaaggagatcgtacggaaatcgggtagaaaacgatcgtgaccgctacggtagccgc
aacgacgaccgagatcatgagcggcttggtagtcgtgacaggcgagactggggacggagg
agccccgagcgcgacagacacagagacttggaggacagaaacaggcgttctggtggccat
cgagacagggagagggattccagagacagggagtctcgcagagacaaggaggaaacgcgc
gggaaggaaaaagcggagatgactgacagggcagacagcgacaaaaaccacgaatctcat
ggcagcaaaatggaagacgcagacattgtttccgaactcacttcaggagactcggaaccc
acgggtgtaaaacctgcggaagagttgacaccagaggctacctcatccctggaacaggcg
gaaaaagatctgggctcagtgtcggaggctcctcgctag
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