KEGG   Strigops habroptila (Kakapo): 115604383
Entry
115604383         CDS       T08851                                 
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
shab  Strigops habroptila (Kakapo)
Pathway
shab03410  Base excision repair
shab04140  Autophagy - animal
shab04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:shab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    115604383 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    115604383 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    115604383 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:shab03036]
    115604383 (HMGB1)
   03400 DNA repair and recombination proteins [BR:shab03400]
    115604383 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:shab04147]
    115604383 (HMGB1)
Chromosome and associated proteins [BR:shab03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    115604383 (HMGB1)
DNA repair and recombination proteins [BR:shab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     115604383 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     115604383 (HMGB1)
Exosome [BR:shab04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   115604383 (HMGB1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_WDHD1 RNA_pol_3_Rpc31 HMG_box_5
Other DBs
NCBI-GeneID: 115604383
NCBI-ProteinID: XP_030333315
UniProt: A0A672UTI8
LinkDB
Position
2:101368072..101376948
AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF
EDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKVDAGKKVVAKAEK
SKKKKEEEEDEDEDEEDEDDEEEEEEEDEDDDDDE
NT seq 648 nt   +upstreamnt  +downstreamnt
atgggcaaaggcgatcctaagaagccgagaggtaaaatgtcttcatacgccttctttgtg
caaacctgccgggaggagcacaagaagaaacatccagatgcttcagtgaacttttcagag
ttctcaaaaaagtgctcagaacggtggaagactatgtcttctaaggagaaagggaagttt
gaagatatggcaaaggccgacaagcttcgttatgaaaaagaaatgaaaaactatgtacca
cctaagggggaaacaaaaaagaagttcaaggatccaaatgcaccgaagaggcctccttcg
gctttcttcttgttttgctctgagtttcgtccaaaaatcaaaggagaacatcctggtctg
tccattggggatgtcgcaaagaaactgggagagatgtggaacaacaccgctgcagatgat
aaacagccttatgaaaaaaaggctgccaaactgaaggagaagtatgaaaaggatattgct
gcataccgggccaaagggaaggttgatgcaggcaaaaaagtagttgccaaggctgagaag
agcaagaagaagaaggaggaggaggaagatgaggatgaggacgaagaggatgaagatgat
gaagaagaggaagaggaggaggatgaagatgatgatgatgatgaataa

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