Strigops habroptila (Kakapo): 115604383
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Entry
115604383 CDS
T08851
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03410
Base excision repair
shab04140
Autophagy - animal
shab04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
115604383 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115604383 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
115604383 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shab03036
]
115604383 (HMGB1)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115604383 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shab04147
]
115604383 (HMGB1)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
115604383 (HMGB1)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
115604383 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
115604383 (HMGB1)
Exosome [BR:
shab04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
115604383 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
RNA_pol_3_Rpc31
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
115604383
NCBI-ProteinID:
XP_030333315
UniProt:
A0A672UTI8
LinkDB
All DBs
Position
2:101368072..101376948
Genome browser
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF
EDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKVDAGKKVVAKAEK
SKKKKEEEEDEDEDEEDEDDEEEEEEEDEDDDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggcgatcctaagaagccgagaggtaaaatgtcttcatacgccttctttgtg
caaacctgccgggaggagcacaagaagaaacatccagatgcttcagtgaacttttcagag
ttctcaaaaaagtgctcagaacggtggaagactatgtcttctaaggagaaagggaagttt
gaagatatggcaaaggccgacaagcttcgttatgaaaaagaaatgaaaaactatgtacca
cctaagggggaaacaaaaaagaagttcaaggatccaaatgcaccgaagaggcctccttcg
gctttcttcttgttttgctctgagtttcgtccaaaaatcaaaggagaacatcctggtctg
tccattggggatgtcgcaaagaaactgggagagatgtggaacaacaccgctgcagatgat
aaacagccttatgaaaaaaaggctgccaaactgaaggagaagtatgaaaaggatattgct
gcataccgggccaaagggaaggttgatgcaggcaaaaaagtagttgccaaggctgagaag
agcaagaagaagaaggaggaggaggaagatgaggatgaggacgaagaggatgaagatgat
gaagaagaggaagaggaggaggatgaagatgatgatgatgatgaataa
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