Strigops habroptila (Kakapo): 115605634
Help
Entry
115605634 CDS
T08851
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03018
RNA degradation
shab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115605634 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
115605634 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115605634 (LSM5)
03041 Spliceosome [BR:
shab03041
]
115605634 (LSM5)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115605634 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
115605634 (LSM5)
Spliceosome [BR:
shab03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115605634 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
115605634
NCBI-ProteinID:
XP_030336243
LinkDB
All DBs
Position
1:complement(152128750..152132972)
Genome browser
AA seq
98 aa
AA seq
DB search
MAANAATNPSQLLPLGNRRRSRELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLED
VTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaacgcggccaccaacccgtctcagctgctgccgctcggtaaccggcggcgc
tcccgggagcttgtggacaaatgcataggttcccgcattcatattgtgatgaagagtgat
aaagaaattgttggaacacttctaggatttgatgactttgtcaatatggtgttagaagat
gttacggaatttgagattacacctgagggcagaagaatcacaaaactagaccagattttg
ttaaatggaaataacataacaatgctggttcctggaggagaaggacctgaagtataa
DBGET
integrated database retrieval system
