Strigops habroptila (Kakapo): 115606117
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Entry
115606117 CDS
T08851
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03420
Nucleotide excision repair
shab04115
p53 signaling pathway
shab04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115606117 (DDB2)
09124 Replication and repair
03420 Nucleotide excision repair
115606117 (DDB2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
115606117 (DDB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shab04121
]
115606117 (DDB2)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115606117 (DDB2)
Ubiquitin system [BR:
shab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115606117 (DDB2)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
115606117 (DDB2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR75_1st
EIF3I
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
115606117
NCBI-ProteinID:
XP_030337344
UniProt:
A0A672TP12
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All DBs
Position
4:complement(5632764..5648393)
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AA seq
506 aa
AA seq
DB search
MPIAGRPAGWSDRMAPVNQAKDKKHEKAHEHWPEEAKSAGKRKLDYKELGNEPQAKRLFV
RKTSKPPAKIGWSRGASMMRNNRVLFHQLERQCSIVHYVYQNMLGGSIRAQLRQCLQLPF
LRSLASYRLFRTASPFDRRVTCLEWHPTHPSTVAVGSKGGDIILWDYEVLTKTCFIKGMG
AGGAITGMKFNPFNPSQLYTSSVAGTTALQDFNGNTVRVFTSTEDWDCWYCSVDVSASCR
AVVTGDNVGNVVLLSTSGEEIWKLKLHRKKVTHVEFNSRCEWLLATASVDQTVKIWDLRN
IKNKMSVLHVLPHEKPVNAAYFSPTDGAKLLSTDQHSEIRVYSSSDWTKPQHLIPHPHRQ
FQHLTPIKATWHPRYDLIVAGRYPDPKFPGYTVNELRTVDVFDGNTGEMVCQLYDPNASG
IISLNKFNPMGDTLASGMGFNILIWSREEMVAKKQEHLLKAMTEQGIGSWSLSRCGGQRQ
AKPGTKKLKANFVLGAGGDGNKKQRF
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcgcgggaaggccggcagggtggtcagacagaatggctccagtgaaccaggca
aaggacaagaagcatgagaaggcacatgagcattggccggaagaggcgaaatcagctggg
aagaggaaactggactacaaggaactagggaatgagccacaagcaaagaggttgtttgtg
agaaaaacatccaaacctccagcgaaaatcggttggagtagaggtgcgtccatgatgaga
aacaacagagtcctcttccatcagctggagcggcagtgcagcattgttcattacgtgtac
cagaacatgctgggaggctccattcgggcacagctcaggcagtgtctgcagctgcccttc
ctgcgctctcttgcctcataccgcctctttcgaacagcaagtccctttgacaggagggtg
acatgcctggaatggcatccaacacaccctagtactgtagctgttggttccaaaggtgga
gacatcatcctttgggactatgaagtacttactaaaacctgcttcataaaagggatggga
gctggaggggccatcacaggaatgaagtttaacccttttaaccctagtcagctgtacact
tcgtcagttgccggcactaccgccctgcaggattttaatggcaatactgtccgggtcttc
accagcaccgaggactgggattgctggtactgcagcgttgatgtttctgcgagctgccgg
gcggtggtgaccggtgataatgtgggcaacgtggttctgctcagcacttctggggaagag
atttggaagctgaaattgcacaggaagaaagtgactcacgtggagtttaactcccgatgt
gagtggctgctggccacagcgtctgtggatcagacagtcaaaatctgggacctcagaaac
atcaaaaacaaaatgagtgttcttcatgtgcttcctcatgagaaacctgtcaatgcagct
tacttcagcccaacagatggtgccaagctcctcagcacggaccagcatagtgaaatcagg
gtttactcatcttcagactggaccaagccacagcatctgatcccacatccacatcggcag
tttcagcacctcacacctattaaggcaacgtggcatcctcgctacgacctcattgtggca
ggtcgctacccagaccccaagttcccggggtacacagtgaacgagctacgaactgttgat
gtatttgatggcaacactggggagatggtttgtcagctctacgacccaaacgcttctggc
atcatctcgctcaataaatttaaccctatgggggacacgctggcttctggcatgggcttt
aatattctgatctggagccgggaggagatggtggccaagaagcaagaacatcttttgaaa
gccatgacagaacaggggattggaagctggagtttgtccagatgtggagggcagaggcag
gcaaaacctgggacaaagaaactcaaagctaactttgtattgggagctggaggagatggg
aacaaaaagcaacgattctaa
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