Strigops habroptila (Kakapo): 115606121
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Entry
115606121 CDS
T08851
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shab03036
]
115606121 (DICER1)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
115606121 (DICER1)
microRNA pathway
RISC loading complex
115606121 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
ResIII
Helicase_C
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
115606121
NCBI-ProteinID:
XP_030337356
UniProt:
A0A672UFZ5
LinkDB
All DBs
Position
4:27099488..27172398
Genome browser
AA seq
1921 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLEITESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEFLSLSNINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLKELDEALSFLNDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKFIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTNETE
TESIVDDDDIFPPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISIPNSSLVENENYCKHSTIVVPENAAHQGANR
TSSAENHDQMSVSYRTLLNESPSKLQIDVSAELAAINGVSYNKNLANGNCDLVNRDFCQG
NQLNYCRQEIPVQPTTSYPIQNLYNSENQPKPSNECTLLSNKYLDGNANRSTSDGCPKMA
VTTSTSKAISLSKDTADSETNPSNGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDEVTKENLLANGKLDNYENDEEDQNLMWRLPKEEADFEDD
FLEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSLGNVQFSSDFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWESTLCATRENCNSEQKNLSSNS
ISASVANSEPSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKA
YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN
NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEED
IEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEME
PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPN
S
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtccattttttggactaccatggcaacaagaagcaattcatgataac
atttacacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataacaca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaacagaaatgggaaaagaactgtgttcttggtc
aactcagcaaatcaagttgctcagcaagtgtcagctgtcaggacacattcggatcttaaa
gtaggagagtattcaagtttagagataactgaatcatggacgaaagagaagtggagtcag
gaattctctaagcatcaggttctggttatgacctgtcatgttgctttgactgttttgaga
aatgagtttttatccctgtcaaatattaatcttctggtgtttgatgagtgccatcttgca
atccaggatcacccataccgtgaaattatgaagatctgtgaggattatccatcatgtcct
cgaattttgggattaacagcttccattttaaatgggaagtgtgatcctgctgagttagag
gagaagatccagaaactggagaaaattttaaagagcaatgccgaaactgcaactgatttg
gtggtcttagacagatatacttctcagccatgtgagattgttgtagactgtggaccatat
actgacaaaagtgggttgtatggaagattattaaaggaattggatgaagcacttagtttt
ctaaatgactgcaacatatccgtacattcaaaagaaagagattctaccttaatttctaag
cagatattgtcagactgtcgagctgtgttggttgttctgggaccctggtgtgcagataag
gtagctgggatgatggtgagagagctacagaagtttatcaaacatgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtaaccccaaaagtaataaagctg
cttgaaatcttgcgcaaatataaaccgtatgaacggcagcagtttgaaagtgttgaatgg
tataacaataggaatcaggataattacgtatcttggagtgattctgaagatgatgaggag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccctttactaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
ataaaagaagctggcaagcaagatccagaactggcttacatcagtagcaattttataact
ggacatggcattggcaagaaccagcctcgtaacaagcagatggaagtagaattcagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaacctactcattgctactagt
attgtagaagagggtgttgacataccaaaatgcaacttggtggtgcgttttgatttgccc
acagaataccgttcctatgtgcagtcaaaaggaagagctagagcaccaatttctaattac
atcatgttagcagatacagacaaaatcaaaagttttgaagaagatctgaagacatacaaa
gcaattgagaagatcctcagaaacaaatgctcaaaatctgttgataccaatgaaactgaa
actgaatctattgttgatgatgatgatatatttccaccctacgtgttgaggccagatgag
aacagtccaagagttactatcaacactgctattggacacataaataggtactgtgctaga
ttaccaagtgatccatttacacacctagctcccaagtgtaaaacccgagaactacctgat
catacattttactctactctctacctgccaatcaactcacctcttcgagcttcaattgtg
ggtcctccaatgagttgtgcaagactggctgagagagttgtagctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaagagcttgatttacatgacgaagaagaaaccagtgttccaggaaggcca
ggctctacaaaacggagacagtgctatcctaaagctattccagaatgtttgagggatagt
tatcccaaacctgatcagccctgttacctctatgtaataggaatggtgttaacgactcct
ctacctgatgagctcaacttcaggaggcgaaagctatatcctcctgaggatacaacaaga
tgttttggcatattgacagccaaacctatacctcagattcctcatttccctgtgtatact
cgctctggagaggttacgatatctattgagcttaagaaatctggttttactctgtctctg
caaatgctcgagctgataacacgactccatcagtatattttttcgcatattcttcgtctt
gagaaacctgcactagagttcaaacccacagaagctgattcagcctattgtgttctacct
cttaatgttgttgatgactccagcactttggacattgactttaagtttatggaagacatt
gagaaatctgaagcgcgtacaggcattcccagtacacagtatacaaaagaaatgcctttt
attttcaagttagaagattaccaggatgcggttatcattccacggtatcgaaattttgat
cagcctcatcgattctatgtagctgatgtatacactgatcttactccactcagtaaattc
ccttcccctgaatatgaaacttttgctgaatattataaaacaaagtataatcttgacctt
accaatctcaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaaggggaaggcacttccactaagcagcgctgagaagagg
aaagccaagtgggaaagcttgcagaataagcagatactggttccagagctctgtgctata
catcctattccagcatcgttgtggagaaaagcagtttgcctccccagcatactttatcgc
ctgcactgccttttgacagcagaggaactaagagctcaaacagccactgatgctggtgtg
ggggttaaatcacttcctgcagatttcagatatcctaacttggactttggatggaaaaag
tctattgacagcaaatccttcatctctattcctaactcctctttagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
acctcttctgcagaaaaccatgaccaaatgtctgtgagttacagaacactgctcaatgag
tcacccagtaaactccaaattgatgtctcggcagaacttgcagcaattaatggtgtttct
tataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacagtgagaaccagcccaagcccagcaatgaatgtactctactgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccaaaatggca
gtgaccaccagtacttcaaaagctattagtctttcaaaagacacagcagattctgaaaca
aacccttccaatgggtactcctcaaaaactcttggtcctaatcctggcctcattcttcaa
gctttgactctttcaaatgctagtgatggatttaatctggagcggctagaaatgcttggt
gattcatttttgaagcatgccatcactacatacttgttttgcacttaccctgatgctcat
gagggacggctgtcatatatgagaagcaaaaaagtcagcaactgtaacttgtatcgcctt
ggaaaaaagaaaggactgcctagtcgtatggtggtatcgatttttgaccccccggtcaat
tggcttcctcctggttacatagtaaaccaggataagagcaacactgataagtgggagaag
gatgaagtgacaaaagagaacttgttggctaatggcaagcttgataattatgaaaatgat
gaagaggatcaaaacctaatgtggagattacccaaggaagaagcagactttgaagatgat
tttctggagtatgatcaggagcatatcaaattcattgataatatgttaatgggatcaggg
gcttttgtgaagaaaatttctctctctcacttttcaaccactgattcaaactatgaatgg
aaagcgcccaagaaatcatccctgggtaatgttcagttttcgtcagattttgatgatttt
gactatagctcgtgggatgctatgtgctatctggatcctagcaaggctgttgaagaagat
gattttgtagtgggcttctggaatccatcagaagaaaactgtggtgttgatgcaggaaaa
cagtctatctcgtatgacttgcatacagagcagtgtattgctgacaaaagcattgcagac
tgtgtggaagccctgttgggctgctatctgaccagctgtggtgaaagagctgctcagctt
ttcctgtgttcactggggctgaaggtgctccctgtaattaaaaagactgattgggaaagc
actttgtgtgctaccagagagaactgtaacagtgagcagaaaaatctttcatcaaactct
atttctgcttctgtagctaattcagagccttctctgtataaagacctggagtatggttgt
ttgaagattccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctaaatcac
cttatttctggttttgaaaactttgagaagaaaataaactacagttttaagaacaaggct
tatcttcttcaggcatttactcatgcctcgtaccattataataccattactgattgttac
cagcgcttagagttcctgggagatgcaattctggactacctcataaccaagcacctttat
gaagacccacggcaacactctccaggagttcttaccgacctgcgatctgctctagtcaat
aataccatttttgcatcattagctgtaaagtatgactaccacaagtacttcaaagctgtc
tctcccgaactgtttcatgttattgatgattttgtgcagtttcaaatggaaaagaatgaa
atgcaaggaatggattctgagctcagaagatctgaagaagatgaagaaaaagaggaagac
attgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatg
gatagcggaatgtctttggaaatggtgtggcaagtgtactatccaatgatgaggccatta
atagagaaattttctgctaatgtgccccgttctccagtgcgagagctgctggagatggag
ccagagacagccaaatttagtcctgcagaaagaacttatgatggaaaggtcagagtaaca
gtggaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaa
tctgcagctgcgagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaac
agctga
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