Strigops habroptila (Kakapo): 115606425
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Entry
115606425 CDS
T08851
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shab04131
]
115606425 (VPS50)
Membrane trafficking [BR:
shab04131
]
Protein recycling
Others
EARP complex
115606425 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
115606425
NCBI-ProteinID:
XP_030338148
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All DBs
Position
1:121943827..122027744
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AA seq
986 aa
AA seq
DB search
MQKIKSLMTRQGLRSPQESVHDLSPIESFRIPSKEELRELREEPIDPQAQQEIINSIEEV
YFSNDSFDIVKYELERLPPVLSLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVQELE
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQTSLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDISHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMQWHENHDQDEVAAVSSV
SDGGNVIGTEENSFDRSYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSNFKYDDFIFVLD
VISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKTYHRTRLEELRMFLENETWELCPVKSS
FSILQLHEFKFMEQSRSPSVSPSKQPASAISTAVTLFEQYCNGGNPFEIQADSKDDETED
VLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPVKSVSRETLRSRKRSDY
NLSKANAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRN
DTPIPSSSLSTSNREQHSARQFESTGLGLSSSRLRTTLNRIQESLIDLEVSGDPTGTLTA
AEERKEKVPSPHLSHLVILTSGNSLYGLAERVVATESLVFLAEQFECLQPHLDAVMPAAK
KPFLQQFYSQTVSTASELRKPVYWIVAAKAIDYEQMLLLMANVKWDVKEIMSQHNIYVDA
LLKEFEEFNRRLNEVSKRVRIPLPVSNILWEHCIRLANRTLVEGYANVKKCSNEGRALMQ
LDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLAENDMEGWIKEHREYSTKQLTNLVNV
CLGSHINKKARQKLLATIDDIDRPKR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgctgatgacccgccagggtctaagaagtcctcaggagagtgtt
catgacctcagtcctattgaaagctttcggattcctagtaaggaggagctcagagaacta
cgtgaagaaccaattgaccctcaagctcagcaagaaataattaacagcattgaagaagtt
tatttttccaatgattcctttgatattgtgaagtatgagttagagaggcttcctccagta
cttagtcttcaagaactggaagagtatagagacaaattgaaacaacagcaagctgctgtg
tctaagaaagttgcagacttgattcttgaaaaacagcctgcatatgttcaggaacttgaa
cgtgttacatcattgcagactggccttcaactagcagctgttatttgcacaaatggaaga
agacacctgaatatagcaaaggaaggcttcacacaaactagcttggggcttcttgctaat
caaagaaagcgacagttgcttattggactgctaaagtctctgagaacaataaaaacactg
caaagaactgatgtacgcttgagtgagatgttggaggaagaggactatccaggagctatt
cagctgtgcttggaatgccagaaagcagccagcactttcaaacactacagttgcataagt
gagttgaattcaaaactgcaggacaccttggaacaaatagaggaacagttggatgtagca
ctctccaaaatatgcaagaactttgatatcagtcattatacaaaggttcagcaagcttac
aggctacttggaaaaacacagacagcaatggaccagttacatatgcacttcactcaagcc
attcacaacactgtgtttcaagtagtccttggatatgtggagctgtgcgcaggaaacaca
gacaccaagtttcagaagttacagtacaaagacctctgtacgcatattacatcagatagc
tacattccgtgccttgctgatctctgcaaagccctctgggaagtcatgctcagttactac
cgaacaatgcagtggcatgagaatcatgaccaagatgaggtagcagctgtgtcatctgtt
tcagatggtggcaatgtgattggaacggaagagaacagttttgaccgcagctatgtaaaa
aagaaattggaacatgggctttcacgaatatggcaggatgttcaactgaaagtgaaaact
tatcttctgggaacagatctgtctaacttcaaatatgacgactttatatttgtacttgat
gttatcagcaggctgatgcaagttggagaagaattttgtggcagtaagtctgaagttttg
caagaatctatcaggaaacaaagtgttaactatttcaaaacataccacagaacccgtctt
gaagaattaagaatgtttttggagaatgagacctgggaactttgtcctgttaaatcaagc
tttagtattctgcagcttcatgaatttaagttcatggagcagtcacgttctccatctgtg
tcacctagtaagcagcctgcttcagcaatttcaacagcagtaactttatttgagcagtac
tgtaacggaggaaacccatttgaaattcaggctgacagcaaggatgatgagacagaagac
gtcttagcttccaatgggtacgaatcagatgagcaagaaaaaagtgcgtatcaagagtac
gatagtgacagtgatgttcctgaagagttgaaaagagattatgtggatgagcagacggga
gatgcccctgtaaaaagtgtttctcgagaaactctgaggagcagaaagaggtcagattat
aacctgagtaaagcgaatgcacctatcctaacaaacactacgctgaatgtaataaggctt
gttgggaaatacatgcagatgatgaatattctgaaaccaattgcattcgatgtgatccac
ttcatgtcccagctcttcgattattatttgtatgcagtctatacgtttttcggccgaaat
gacacgcccataccgagttcctcactctctacctctaacagagaacagcacagtgctagg
cagtttgaatcaacaggactgggtctcagtagtagcagattacgcaccacactgaacagg
atccaggagagtctgattgatctggaggtctctggtgatcccacaggaactctcacagct
gctgaagagagaaaggagaaggtgccaagcccacatctcagtcatcttgtaattttgaca
tctggcaattcgctgtatggtttggcagagagagtggtggccacggagtctttggtattt
ctggctgagcagtttgagtgtcttcagcctcatcttgatgcggtgatgccagctgccaag
aagccttttcttcagcagttctattctcagacagtgtcaactgccagtgaactacgtaaa
ccagtttattggattgttgctgctaaagccattgattatgaacaaatgctgcttctcatg
gctaatgtgaaatgggatgtgaaggaaatcatgtcacaacacaatatatatgtagatgct
cttttaaaggagtttgaagaatttaacagaaggttgaacgaggtgtctaagagagtccgt
attcccctgccagtctccaacatcctttgggagcactgcatacgcttggccaatagaact
cttgtggaaggttatgccaatgtaaagaagtgcagcaatgaaggacgtgctttgatgcaa
ctggactttcaacaattcttaatgaaactagagaagttaacagacattagacctattcca
gataaagaatttgtggagacctacattaaagcatactacctagcagaaaatgacatggaa
ggctggataaaagaacatagggaatattccactaagcagttgaccaatctggtgaatgtc
tgtctgggctcccacatcaacaaaaaggcaagacagaagctgctagccactattgatgac
atagacaggcctaaaagataa
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