Strigops habroptila (Kakapo): 115606493
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Entry
115606493 CDS
T08851
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04140
Autophagy - animal
shab04148
Efferocytosis
shab05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115606493 (VPS39)
04148 Efferocytosis
115606493 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115606493 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shab04131
]
115606493 (VPS39)
Membrane trafficking [BR:
shab04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
115606493 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
SAM_CEP-1_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
115606493
NCBI-ProteinID:
XP_030338334
UniProt:
A0A672TR06
LinkDB
All DBs
Position
4:complement(8401741..8427258)
Genome browser
AA seq
884 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDIGEVMSSESVCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTC
DLQQSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALN
WTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLTFLIENFKSLTIP
YLEHIIHVWEETGADFHNCLIQLYCEKVQALMKEYLNSFPPDKTPVPAGEEGGDLGDYRK
KLLLFLEKSSWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENY
CHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCTVCKKKIGNSAFARYPNARVVHYFCSKEVNTLDT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgtaggtaccaaacaagggcatcttctgctttac
aggatcaagaaagacataggagaggttatgtcatcagaaagtgtctgttgcaataggttt
gaagtgacgctagagaaatccaacaagaacttctcaaaaaagattcagcagattcatgtt
gtttctcagtttaaaattctggtcagtctattagaaaataacatttatgtccatgacctg
ttgacatttcaacaaatcaccacggtttccaaggcaaaaggtgcatctctcttcacttgt
gatcttcagcagtcggatacaggggaagaggtgctgagaatgtgtgtggcagtgcggaag
aagctacaactttatttttggaaggacagagagttccatgaactacagggggacttcagt
gtacctgatgtacccaagtctatggcctggtgtgagaactccatctgtgtaggctttaag
agggactattacctgatacgggtggatggaaaaggatccatcaaagaactgtttcccaca
ggaaagcagctggaaccattggtagctcctgtagcagatggaaaagttgcggttggccaa
gatgatctaacagttgtgcttaatgaagaaggggtctgtacgcagaaatgtgccttgaat
tggacagatattcctatagccatggaacaccagcctccctacatcattgctgttctgcca
aggtatgtggagatccgcacttttgaacctcggctgttggtacagagtattgagctgcag
agaccacgcttcatcacctctggaggcacaaatattatatatgtggcaagtaatcacttc
gtttggcggctcattccggtgtccatagctacacagatccagcagcttctgcaggacaag
caatttgagttggctttgcagttggcagaaatgaaggatgattcggatagtgagaagcga
caacaaattcaccacataaagaatctctttgccttcaacctcttctgccagaagcgcttt
gatgagtctatgcaagtttttgccaagcttggtacagatcccactcatgtgatgggtctg
tatcctgacctcctgcccacagattacaggaaacagctacagtatcccaaccccttgcca
gggctctctggggcagagctggagaaggcacatttagctctgatagactacctaactcaa
aaaagaagtcagctggtgaagaagctaaatgattctgaccatcagtctagtacctcaccc
ctcatggaaggaacacccactatcaaatccaaaaagaagctgttacaaatcattgatacc
accctgttaaagtgttacctccacacaaatgtagcgctcgtggcaccattgctacgtctg
gaaaacaatcactgccatattgaagagagtgagcatgtattaaagaaggcacacaaatat
agtgagctgataatactgtacgagaagaaaggtctgcatgagaaagcattacaggtactg
gtggatcagtcaaagaaagccaactcacctttgaagggtcatgagaggacagtgcaatat
ctgcagcatttgggcacagaaaacttgcacttggttttttcctactctgtctgggtgcta
agagattttcctgaagatggactgaaaatatttacagaagacctccctgaagtggaagct
ttgccacgagacaaagtgctcactttcttgatagaaaattttaaaagcttgactattcct
tatctggagcacatcattcatgtctgggaagaaaccggtgcagactttcacaactgtctg
atccagctgtactgtgaaaaagtgcaggccttgatgaaagaatatctaaattctttccct
ccagataaaactccagtgcctgcgggggaggaaggaggagacttgggggattaccggaaa
aagcttctactttttctggagaagtctagctggtatgagccaagtcgactaattagtgac
ttcccctttgatggtctcctagaagaacgtgctctgctcttgggtcgtatggggaagcat
gagcaagctttgtttatttatgttcatattttgaaggacaccaacatggctgaaaactac
tgccataaacattatgacagaaacaaagatggcaacaaagatgtctacctgtcattgctc
cggatgtatctctccccacctagtgttcactgcctgggaccaatcaagatggaagtgctg
gagcctcaagccaatctgcaggctgctctgcaggttttggaactgcatcacagcaaactg
gataccaccaaggcaataaacctactcccagcaaatacacaaataagtgagattcgaatc
ttcttagagaaagtccttgaagaaaatgctcagaagaaaagatttaatcaagtactcaag
aatcttctccatgcagagtttctgagggtccaggaggagcggatcttgcatcagcaagtg
aagtgcattattacagaggagaaggtgtgcactgtatgtaaaaagaagataggtaacagt
gcatttgctcgataccctaatgcaagagttgtgcattatttctgctccaaagaagtcaac
acattggatacctga
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