Strigops habroptila (Kakapo): 115606782
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Entry
115606782 CDS
T08851
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03440
Homologous recombination
shab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115606782 (PALB2)
03460 Fanconi anemia pathway
115606782 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shab03400
]
115606782 (PALB2)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
115606782 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
115606782 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
115606782
NCBI-ProteinID:
XP_030339126
LinkDB
All DBs
Position
4:complement(85737463..85748984)
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AA seq
1349 aa
AA seq
DB search
MEEPAGGGALSGSQREQVRARERGRARARQRGASPARCVLQLREKLALLRREYSETVSRL
RRARRAERARSHGRGAAAEGGRREPSPTGSRDIEPLSADKHETFQLQTKPRSDLGAQEQT
CDAFKHVPQFSSHEGGLQDSSQAESIQASQEILCAGISRPTPEEKKSQTSRSLLRLRRRA
KARVSGEGGSVRDVSLSSPDETVTNLVASTRELQSPVFRQSSVSAAEETAPRAAGPARVQ
REENGFTPPSAASGVTEDYVPPGAPELFPHALQDSSSVWQARCQGAVPTPDNPEPAQPCS
ENRDSALVDINDDGGKVSPSVIRQTVGESMCEDQGELRRLLDLMSENEVLSPDGNKTVTN
ESKHHEGNQSDSSSLDPFPTDLALGGVEELLENQQLETQARLSPPEKAAAPGSSLSSCTV
VEGLLFPVEYYVRTTRRMSSCQRKVDLDAIILSQLGRSKKGQRSKCKPRDANSDQPSQER
AENDLESGVAPLPCLGAENDPTNLGSPQESLPASSGSSTSLGSISQSSITSTRRDRRRSQ
RKQKGRRKSASNPPGLLVSPELIESLDLITVREGSGLLSSECQSQKENCHAGLEKPPSDE
RKFSAAAARGAAETGVAGAVQPTSADPPAGGSQVLDKCRRALLELPQSPLQNSSSLHPGN
RASPIHAGDLEATFPVCQADGEPAEPGGNEQVPGACRAELLPAINVPLRRSLRCAARQRA
GGHVAKGPQGPEGPASLGLPAVDLDTCGSLFSFRSFQWLAPRLGVTDFHLPDEEFGLLKL
DKLESSPVNDLEVFVPSVFGDGVASEDTQSAQMTPEEKSHRSHLISPFKTGLPKSPHAES
PVSKKELSTHELLLTPLGTVLAGAPTQPGSQISSCVFPAVGATPAVLPEVHSEVSPKTPS
IPPSLHSSNRASSQGVQDGGCKDSAIPLHLDHCGAGSAREEEEQGAAFPVEAERSPSNNC
DEAVALEKHQHSESKQQGSGRASPEQEKAVAEQLAPVLPDGLREESLQLVSKLKDCSSSC
AVDVSTMWWEAAGCRELCVVTACESSVSLWKPLGPNCWGRVYTWQLGEIPVIQIVPLPDS
CNLACVALGDLEIGEIRLLLYSSENDSFKQSLVRTGNIKAALGLKDRRLVSSSRTVQEQH
VEIVSFSETGRSRDGQTLMPPEETVSAFAEVEGMRDALVGTTAVNSVVIWNLKTGQLLKK
MHVGYSYPASICHQAYSDSGLLFVVLSHPHAKESESCGNPAFRVVAFNPSTARSSGVLAS
SLPPGHAGRYLEGDVRGALAAAVLTSGAVAVWDLLLGQCTALLPPGPARGWALARWASTD
ACTGACLLAGQRDGTVCLYRYRQPQPGAA
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atggaggagccggcgggcggcggggcgctcagcggctcgcagagggagcaggtgcgggca
cgggagcggggccgggcccgggcccgccagcgcggtgccagcccggcgcgttgtgtcttg
cagctgcgggagaagctggcgctgctgcggagggagtacagcgagaccgttagccggctg
aggcgggcgcggcgagcagagcgagccaggagccacggccggggcgcggcggcggaggga
ggccggcgggagccgagccccacaggttctagagatattgaacctcttagtgctgacaaa
catgaaacctttcagttgcagactaaaccccgctccgatcttggcgcacaggagcaaacc
tgtgatgcatttaagcatgttccccagttctccagtcatgagggtggcctgcaggacagc
tcgcaggcagaaagcatacaggctagccaggaaatcctgtgtgctggaatctccaggcct
acccctgaggagaagaaatcccaaacctccagaagcttgctgaggctgaggagacgggcg
aaggctcgggtgtcaggggaaggaggatcagtgcgtgatgtgtctctaagtagccctgat
gaaacggtgacaaatctagtcgccagtacacgggaacttcagtcaccagtcttcaggcaa
agcagtgtctcagccgctgaggaaacggctccgagagcagcaggaccagcacgtgtgcag
agagaagagaacggtttcactcctcccagtgcagcatcaggagtcacagaagactatgtc
cctccaggagcacctgagctcttcccacatgcactgcaggacagcagcagtgtctggcag
gccaggtgccagggtgctgtgcccacacctgacaaccctgagcctgcacagccgtgttca
gagaacagagactctgctttagttgacatcaatgatgatggaggaaaagtatccccaagt
gtaataagacaaacggttggtgagagtatgtgtgaagatcagggggaattacgtaggctc
ttggatttaatgtcagaaaatgaagtattgtctcctgacggaaataagactgtaactaat
gaaagcaaacaccacgaagggaatcagagtgacagtagtagcttagatccctttccgaca
gatcttgctctgggcggtgttgaagaactgctggagaatcaacagcttgaaactcaggcg
agactttctcctccagaaaaggcagcagctcctggaagctccctgagctcgtgcacggtg
gttgaagggcttctcttcccggttgaatactacgtcaggacaactcggcgcatgtccagc
tgccagaggaaggtggaccttgacgctataatcctcagccagctgggcaggagcaagaag
ggtcagcgaagtaagtgcaagcccagagatgcaaattcggatcagccctcccaagaaaga
gctgaaaatgatttggagtcgggggttgcgccgttgccttgtcttggtgcagaaaatgat
ccaacaaatttgggtagtcctcaggaatctcttcctgcctccagtggcagcagcacttct
cttggatccatttcccagagcagcatcactagcacaaggcgagatcggagacgatcacag
aggaagcagaaaggaagaagaaagtctgccagcaacccccccgggcttctggtctcacca
gaactcatagagagcctggatctcataacggtgagggaaggcagtggtctgctgtcaagt
gagtgtcagagccaaaaggaaaactgtcatgctggtcttgaaaaaccaccttcagatgag
agaaagttctctgctgctgcagctcgtggggctgcagagacaggagtggctggtgctgta
cagccaacgagtgcggatcctcctgcgggggggagccaagtgcttgacaagtgccgtagg
gctctgttagaactgcctcaaagcccactccagaacagcagttctctgcacccggggaac
agagcttctcccatccacgcaggagacctggaagccaccttcccggtgtgccaggctgat
ggagagccagcggagcctggggggaatgagcaggtacccggagcctgcagggccgagctg
ctccctgcgattaacgtccccctgcgccgctccctgcgttgtgctgcgaggcagagagca
ggagggcacgtggcaaaaggtccacaaggtcctgagggtcctgcttctcttggcctccct
gctgttgaccttgatacttgtggctctctcttctccttccgcagcttccagtggctggcc
cccaggctgggtgtcacagacttccacttacctgatgaggaatttggactactaaaactt
gacaaactagaatcttcccctgtgaacgacttggaggtttttgttccgagtgtgtttgga
gatggggtggcttcagaggacacacagagtgcacaaatgactccagaagaaaaaagccac
agaagtcatttgatttcacctttcaaaactgggttgcccaagtcacctcatgcagaaagc
ccagtttccaagaaggagctttccacccatgaattgctgcttactcccctggggactgtc
ttagctggtgctcccactcagcctgggtcccagatttcctcatgtgtgttccctgctgtg
ggtgcaaccccggctgtgttacctgaggtacacagtgaggtgtcccccaagacaccttcc
atccctccaagcctgcattcctccaacagagcatcttctcagggcgtgcaggatggagga
tgcaaagactctgccattccactgcacttggaccactgtggtgcaggatctgctagagaa
gaggaggaacaaggtgcagcgtttcctgtagaagctgaaagaagtcccagtaataactgt
gatgaggctgtggccttggagaagcaccagcactcagagagcaaacagcagggatccggc
agagcttctcctgagcaggaaaaagctgtagcagaacagttggctccagtactgcctgat
ggcctgagagaagagagcttgcagcttgtatcaaagctaaaggattgttcgagttcctgt
gccgtggatgtgagcaccatgtggtgggaagcagctggctgcagagagctctgtgtggtg
acagcttgtgagagctctgtctccctgtggaagcccctggggcccaactgctggggaagg
gtctacacgtggcagctcggagagattcctgtaatacagatcgttcctctgccggactcc
tgcaatcttgcgtgtgtagcactgggagacttggagattggagaaataaggctcctgctt
tattcttctgagaatgactcattcaagcaatcactagtgagaactggaaacataaaagct
gctcttgggctgaaggacaggaggctggtcagcagcagcaggactgtgcaagagcagcac
gtggaaatagtgtccttttcagagacaggaaggagcagggatggacagactttgatgcct
cctgaagagactgtttcagcttttgctgaagtggaagggatgagggacgccctggttggc
accactgcagtgaacagcgttgtcatttggaatctgaaaacaggccagctcctgaagaag
atgcatgttggttattcctacccagcttccatctgccatcaagcctattccgactctggc
ctcctctttgtggttttgagccatccacacgccaaagagagcgagtcctgtggaaaccct
gcgttccgtgtggtggcgttcaaccccagcacagccaggagcagcggcgtgctggcctcc
tccctcccgcccgggcacgccggaaggtacctggagggtgacgtgaggggcgccttggcc
gcagccgtgctgacatcgggtgccgtggccgtgtgggacctgctcctgggccagtgcacg
gccctgctgcccccgggcccggcgcggggctgggccctggcccgctgggccagcacggat
gcctgcaccggtgcctgcctgctggccgggcagcgggacggcaccgtctgcctctaccgg
taccggcagccacagcccggggcagcctga
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